User:Karmella Haynes/Notebook/PcTF Genomics/2013/01/06: Difference between revisions
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{| {{table}} | {| {{table}} | ||
|- | |- | ||
| Gene || Chromosome || Expected state || H3K27me3 max. DOC || H3K27me3 mock max. DOC || PcTF max. DOC || PcTF mock max. DOC | | Gene || Chromosome || Expected state || H3K27me3<br>max. DOC || H3K27me3 mock<br>max. DOC || PcTF<br>max. DOC || PcTF mock<br>max. DOC | ||
|- | |- | ||
| ALAS1 || chr 3 || active || ~160 || ~100 || || | | ALAS1 || chr 3 || active || ~160 || ~100 || || | ||
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| TBP || chr 6 || active || ~160 || ~275 || || | | TBP || chr 6 || active || ~160 || ~275 || || | ||
|- | |- | ||
| ACTB || chr 7 || active || ~180 | | ACTB || chr 7 || active || ~180 || ~1 || | ||
|- | |- | ||
| GUSB || chr 7 || active || ~160 | | GUSB || chr 7 || active || ~160 || ~240 || | ||
|- | |- | ||
| PPIA || chr 7 || active || ~90 | | PPIA || chr 7 || active || ~90 || ~480 || | ||
|- | |- | ||
| GAPDH || chr 12 || active || ~90 | | GAPDH || chr 12 || active || ~90 || ~240 || | ||
|- | |- | ||
| B2M || chr 15 || active || 0 | | B2M || chr 15 || active || 0 || ~1 || | ||
|- | |- | ||
| G6PD || chr X || active || ~130 | | G6PD || chr X (23) || active || ~130 || 0 | ||
|- | |- | ||
| HPRT1 || chr X ( | | HPRT1 || chr X (23) || active || ~150 || ~320 | ||
|- | |- | ||
| PGK1 || chr X ( | | PGK1 || chr X (23) || active || ~240 || ~475 || | ||
|- | |- | ||
| CDKN2A || chr9 || silent (H3K27me3+) || ~90 | | CDKN2A || chr9 || silent (H3K27me3+) || ~90 || ~650 | ||
|- | |- | ||
| MMP12 || chr11 || silent (H3K27me3+) || ~18 | | MMP12 || chr11 || silent (H3K27me3+) || ~18 || ~1 | ||
|- | |- | ||
| MYT1 || chr20 || silent (H3K27me3+) || '''~270''' | | MYT1 || chr20 || silent (H3K27me3+) || '''~270''' || ~525 | ||
|- | |- | ||
| OLIG1 || chr21 || silent (H3K27me3+) || 0 | | OLIG1 || chr21 || silent (H3K27me3+) || 0 || 0 || | ||
|- | |- | ||
| OLIG2 || chr21 || silent (H3K27me3+) || ~130 | | OLIG2 || chr21 || silent (H3K27me3+) || ~130 || 0 | ||
|} | |} | ||
Revision as of 18:30, 6 January 2013
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01/06/13
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