User:Karmella Haynes/Notebook/PcTF Genomics/2013/01/06: Difference between revisions

From OpenWetWare
Jump to navigationJump to search
Line 30: Line 30:
| PPIA || chr 7 || active || ~90 || ~480 || ~10
| PPIA || chr 7 || active || ~90 || ~480 || ~10
|-
|-
| GAPDH || chr 12 || active || ~90 || ~240 ||
| GAPDH || chr 12 || active || ~90 || ~240 || ~27
|-
|-
| B2M || chr 15 || active || 0 || ~1 || ~15
| B2M || chr 15 || active || 0 || ~1 || ~15
Line 46: Line 46:
| MYT1 || chr20 || silent (H3K27me3+) || '''~270''' || ~525 || ~32
| MYT1 || chr20 || silent (H3K27me3+) || '''~270''' || ~525 || ~32
|-
|-
| OLIG1 || chr21 || silent (H3K27me3+) || 0 || 0 ||  
| OLIG1 || chr21 || silent (H3K27me3+) || 0 || 0 || ~5 ||
|-
|-
| OLIG2 || chr21 || silent (H3K27me3+) || ~130 || 0
| OLIG2 || chr21 || silent (H3K27me3+) || ~130 || 0 || 0 ||
|}
|}


Revision as of 18:53, 6 January 2013

Pc-TF Genomics <html><img src="/images/9/94/Report.png" border="0" /></html> Main project page
<html><img src="/images/c/c3/Resultset_previous.png" border="0" /></html>Previous entry<html>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</html>Next entry<html><img src="/images/5/5c/Resultset_next.png" border="0" /></html>


01/06/13

  • ChIP seq: run SeqMan NGen alignment on H3K27me3 mock (lane 7)
  • Expand table from 1/05/13 to include PcTF, PcTF mock, H3K27me3, H3K27me3 mock


Gene Chromosome Expected state H3K27me3
max. DOC		 H3K27me3 mock
max. DOC		 PcTF
max. DOC		 PcTF mock
max. DOC
ALAS1 chr 3 active ~160 ~100 ~10
TBP chr 6 active ~160 ~275 ~16
ACTB chr 7 active ~180 ~1 ~22
GUSB chr 7 active ~160 ~240 ~16
PPIA chr 7 active ~90 ~480 ~10
GAPDH chr 12 active ~90 ~240 ~27
B2M chr 15 active 0 ~1 ~15
G6PD chr X (23) active ~130 0 ~14
HPRT1 chr X (23) active ~150 ~320 ~11
PGK1 chr X (23) active ~240 ~475 ~12
CDKN2A chr9 silent (H3K27me3+) ~90 ~650 ~17
MMP12 chr11 silent (H3K27me3+) ~18 ~1 ~6
MYT1 chr20 silent (H3K27me3+) ~270 ~525 ~32
OLIG1 chr21 silent (H3K27me3+) 0 0 ~5
OLIG2 chr21 silent (H3K27me3+) ~130 0 0



Retrieved from "https://openwetware.org/mediawiki/index.php?title=User:Karmella_Haynes/Notebook/PcTF_Genomics/2013/01/06&oldid=665636"