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 Pc-TF Genomics
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<html><img src="/images/9/94/Report.png" border="0" /></html> Main project page
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01/07/13
Array Star analysis
- Open Array Star. Windows only. This can be run on Parallels from a Mac.
- Click "Start Chip-Seq project..."
- Add Experiments to Import: Click [Add File..]
- Select a ###.bam file from the ChiP seq data folder (shared desktop). Click [Next >].
- Create binding proteins: Click [Create Binding Protein]. Binding protein label = the name of the protein that was pulled down by the antibody via ChIP. Binding site type = Unknown. Click [OK].
- Assign Binding Proteins to Experiments: Protein label = the appropriate binding protein (created in previous step). Click [Next >].
PcTF vs. H3K27me3
- Add Experiments to Import: added 6_aln_sorted.bam (H3K27me3) and 1_aln_sorted.bam (PcTF)
- Create binding proteins: created "PcTF" for 1_aln_sorted, and "H3K27me3" for 6_aln_sorted.
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Pc-TF Genomics
