User:Karmella Haynes/Notebook/PcTF Genomics/2013/06/18

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(06/18/13)
Current revision (21:44, 18 June 2013) (view source)
(06/18/13)
 
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* Need 100 μL complete steady-luc buffer per assay = '''1800 μL complete steady-luc buffer'''
* Need 100 μL complete steady-luc buffer per assay = '''1800 μL complete steady-luc buffer'''
* Dissolved dry D-luciferin to make 50x stock by adding 80 μL dH<sub>2</sub>O to the vial
* Dissolved dry D-luciferin to make 50x stock by adding 80 μL dH<sub>2</sub>O to the vial
-
* Made 2000 μL complete steady-luc buffer: Add 40 μL 50x D-luciferin to 2 mL buffer
+
 
<u>Luc assay</u>
<u>Luc assay</u>
 +
* Filtered 500 μL cells through strainer caps (<font color="red">should use 600 μL next time</font>)
 +
* Transferred 100 μL strained cells to 3 wells in 96-well plate (black walls; clear, flat bottom)
 +
** Saved remainder of strained cells for flow cytometry/ counting
 +
* Made 2000 μL complete steady-luc buffer: Added 40 μL 50x D-luciferin to 2 mL buffer
 +
* QUICKLY Added 100 μL of complete steady-luc buffer to each sample (pipetted up/down once to mix)
 +
* Incubated at room temp/ 10 min.
 +
* Synergy H1 reader - Created new protocol: KAH_luciferase
 +
** Optimized specs: Luminescence, Endpoint, Full plate, Integration time 0:01.00 (MM:SS.ss), Filter set 1, Emission: full light, Optics: top, '''Gain 200''', Read Speed: normal, Delay: 100 msec, Extended Dynamic Range, Read Height: 1 mm
-
<u>Cell count</u>
+
 
-
* Wang lab's Accuri flow cytometer. Set machine to sample 2 uL of cells
+
<u>Cell counts</u>
 +
* Wang lab's Accuri flow cytometer.
 +
* Set machine to read 20 uL of cells
 +
* Be sure to "clean" with water-run in between samples
{| class="wikitable" border="0" cellspacing="3" <!-- Rxn. table -->
{| class="wikitable" border="0" cellspacing="3" <!-- Rxn. table -->
|-valign="top"
|-valign="top"
-
| <u>Reagent</u> || <u>Volume</u>  
+
| <u>Sample ID</u> || <u>Gated count/ 20 μL</u> || &nbsp; || <u>Cells/ 100 μL</u>
|-
|-
-
| reagent 1 || # μL
+
| sample 1 || 8077 || x5 = || 40,385
|-
|-
-
| reagent 2 || #
+
| sample 2 || 9552 || x5 = || 47,760
|-
|-
-
| reagent 3 || #
+
| sample 3 || 9460 || x5 = || 47,300
|-
|-
-
| reagent 4 || #
+
| sample 4 || 3608 || x5 = || 18,040
|-
|-
-
| dH<sub>2</sub>O || #
+
| sample 5 || 4723 || x5 = || 23,615
|-
|-
-
| &nbsp; || # μL
+
| sample 6 || 5851 || x5 = || 29,255
|}
|}
-
 
-
--> Reaction conditions
 
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Current revision

Pc-TF Genomics Main project page
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06/18/13

  • Luciferase activity assay



Luciferase activity assay - time point 1


Cell prep

  • Harvested cells
    • Seeded new dox+ plate with 1/2 of cells
    • Pelleted other half, resuspended in 2 mL FACS buffer


Assay reagents

  • Used the Biotium Steady-Luc Firefly HTS Assay Kit
  • Thawed reagents to room temp
  • 6 experimental samples x 3 repliates = 18 assays (one time point)
  • Need 100 μL complete steady-luc buffer per assay = 1800 μL complete steady-luc buffer
  • Dissolved dry D-luciferin to make 50x stock by adding 80 μL dH2O to the vial


Luc assay

  • Filtered 500 μL cells through strainer caps (should use 600 μL next time)
  • Transferred 100 μL strained cells to 3 wells in 96-well plate (black walls; clear, flat bottom)
    • Saved remainder of strained cells for flow cytometry/ counting
  • Made 2000 μL complete steady-luc buffer: Added 40 μL 50x D-luciferin to 2 mL buffer
  • QUICKLY Added 100 μL of complete steady-luc buffer to each sample (pipetted up/down once to mix)
  • Incubated at room temp/ 10 min.
  • Synergy H1 reader - Created new protocol: KAH_luciferase
    • Optimized specs: Luminescence, Endpoint, Full plate, Integration time 0:01.00 (MM:SS.ss), Filter set 1, Emission: full light, Optics: top, Gain 200, Read Speed: normal, Delay: 100 msec, Extended Dynamic Range, Read Height: 1 mm


Cell counts

  • Wang lab's Accuri flow cytometer.
  • Set machine to read 20 uL of cells
  • Be sure to "clean" with water-run in between samples


Sample ID Gated count/ 20 μL   Cells/ 100 μL
sample 1 8077 x5 = 40,385
sample 2 9552 x5 = 47,760
sample 3 9460 x5 = 47,300
sample 4 3608 x5 = 18,040
sample 5 4723 x5 = 23,615
sample 6 5851 x5 = 29,255



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