User:Karmella Haynes/Notebook/PcTF Genomics/2013/07/06: Difference between revisions

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|style="background-color: #EEE"|[[Image:owwnotebook_icon.png|128px]]<span style="font-size:22px;">Pc-TF Genomics</span>
|style="background-color: #EEE"|[[Image:owwnotebook_icon.png|128px]]<span style="font-size:22px;">Pc-TF Genomics</span>
|style="background-color: #F2F2F2" align="center"|<html><img src="/images/9/94/Report.png" border="0" /></html> [[{{#sub:{{FULLPAGENAME}}|0|-11}}|Main project page]]<br />{{#if:{{#lnpreventry:{{FULLPAGENAME}}}}|<html><img src="/images/c/c3/Resultset_previous.png" border="0" /></html>[[{{#lnpreventry:{{FULLPAGENAME}}}}{{!}}Previous entry]]<html>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</html>}}{{#if:{{#lnnextentry:{{FULLPAGENAME}}}}|[[{{#lnnextentry:{{FULLPAGENAME}}}}{{!}}Next entry]]<html><img src="/images/5/5c/Resultset_next.png" border="0" /></html>}}
|style="background-color: #F2F2F2" align="center"|[[File:Report.png|frameless|link={{#sub:{{FULLPAGENAME}}|0|-11}}]][[{{#sub:{{FULLPAGENAME}}|0|-11}}|Main project page]]<br />{{#if:{{#lnpreventry:{{FULLPAGENAME}}}}|[[File:Resultset_previous.png|frameless|link={{#lnpreventry:{{FULLPAGENAME}}}}]][[{{#lnpreventry:{{FULLPAGENAME}}}}{{!}}Previous entry]]&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;}}{{#if:{{#lnnextentry:{{FULLPAGENAME}}}}|[[{{#lnnextentry:{{FULLPAGENAME}}}}{{!}}Next entry]][[File:Resultset_next.png|frameless|link={{#lnnextentry:{{FULLPAGENAME}}}}]]}}
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* Gal4-EED/luc dox time point (48 hours)
* Gal4-EED/luc dox time point (48 hours)
* Gal4-EED/luc PcTF transfection - microscopy & flow cytometry
* Gal4-EED/luc PcTF transfection - microscopy & flow cytometry
* SK-N-SH +PcTF & mock - TRIzol prep #1




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<u>Assay reagents</u>
<u>Assay reagents</u>
* Used the Biotium Steady-Luc Firefly HTS Assay Kit (same as [http://openwetware.org/wiki/User:Karmella_Haynes/Notebook/PcTF_Genomics/2013/07/04 6/18/13])
* Used the Biotium Steady-Luc Firefly HTS Assay Kit (same as [http://openwetware.org/wiki/User:Karmella_Haynes/Notebook/PcTF_Genomics/2013/06/18 6/18/13])




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* Samples loaded in triplicate (by columns)
* Samples loaded in triplicate (by columns)
* Included luc buffer + FACS-buffer "blank" sample (well D1)
* Included luc buffer + FACS-buffer "blank" sample (well D1)
* Other steps same as [http://openwetware.org/wiki/User:Karmella_Haynes/Notebook/PcTF_Genomics/2013/07/04 6/18/13]
* Other steps same as [http://openwetware.org/wiki/User:Karmella_Haynes/Notebook/PcTF_Genomics/2013/06/18 6/18/13]




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| <u>Sample ID</u> || <u>Gated count/ 20 μL</u> || &nbsp; || <u>Cells/ 100 μL</u>
| <u>Sample ID</u> || <u>Gated count/ 20 μL</u> || &nbsp; || <u>Cells/ 100 μL</u>
|-
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| sample 1 || 37,629 || x5 = ||  
| sample 1 || 37,629 || x5 = || 188,145
|-
|-
| sample 2 || ### || x5 = || ###
| sample 2 || 34,580 || x5 = || 172,900
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| sample 3 || 15,784 || x5 = || 78,920
| sample 3 || 40,096 || x5 = || 200,480
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| sample 4 || 16,323 || x5 = || 81,615
| sample 4 || 46,599 || x5 = || 232,995
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| sample 5 || 16,545 || x5 = || 82,725
| sample 5 || 46,491 || x5 = || 232,455
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| sample 6 || 17,885 || x5 = || 89,425
| sample 6 || 46,254 || x5 = || 231,270
|}
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----
'''SK-N-SH TRIzol prep'''<br>
# +PcTF, plate 1
# mock, plate 4
(Cells may need longer to express genes. Previous expt. was done after ~10 days. Will do this prep just in case cell culture declines)
* Used other two plates to passage cells ~1:5 (will prep after returning from SB6.0)
* Cells were 100% confluent
* Discarded growth medium
* Added 2 mL TRIzol directly to plates
* Incubated at r.t. for ~5 min.
* Collected lysed cells from plate with gentle scraping (pipette tip)
* Transferred 500 μL aliquots to 2.0 mL tubes. Stored at -80°C
** 4x PcTF+ samples
** 4x mock samples




Latest revision as of 22:58, 26 September 2017

Pc-TF Genomics Main project page
Previous entry      Next entry


07/06/13

  • Gal4-EED/luc dox time point (48 hours)
  • Gal4-EED/luc PcTF transfection - microscopy & flow cytometry
  • SK-N-SH +PcTF & mock - TRIzol prep #1


Luciferase activity assay - time point: 2 days

Cell prep

  • Harvested cells (induced on 7/04/13)
    • Seeded new 2 new plates with non-induced cells from 7/04/13
    • Pelleted all of the dox+ cells, resuspended in 2 mL FACS buffer


Assay reagents

  • Used the Biotium Steady-Luc Firefly HTS Assay Kit (same as 6/18/13)


Luc assay

  • Filtered 700 μL cells through strainer caps
  • Used opaque white Costar plate (from Rege lab)
  • Samples loaded in triplicate (by columns)
  • Included luc buffer + FACS-buffer "blank" sample (well D1)
  • Other steps same as 6/18/13


Cell counts

  • Wang lab's Accuri flow cytometer.
  • Set machine to read 20 uL of cells
  • Be sure to "clean" with water-run in between samples


Sample ID Gated count/ 20 μL   Cells/ 100 μL
sample 1 37,629 x5 = 188,145
sample 2 34,580 x5 = 172,900
sample 3 40,096 x5 = 200,480
sample 4 46,599 x5 = 232,995
sample 5 46,491 x5 = 232,455
sample 6 46,254 x5 = 231,270


SK-N-SH TRIzol prep

  1. +PcTF, plate 1
  2. mock, plate 4

(Cells may need longer to express genes. Previous expt. was done after ~10 days. Will do this prep just in case cell culture declines)

  • Used other two plates to passage cells ~1:5 (will prep after returning from SB6.0)
  • Cells were 100% confluent
  • Discarded growth medium
  • Added 2 mL TRIzol directly to plates
  • Incubated at r.t. for ~5 min.
  • Collected lysed cells from plate with gentle scraping (pipette tip)
  • Transferred 500 μL aliquots to 2.0 mL tubes. Stored at -80°C
    • 4x PcTF+ samples
    • 4x mock samples




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