User:Karmella Haynes/Notebook/PcTF Genomics/2014/06/04: Difference between revisions
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'''Measure | '''Measure RNA concentration'''<br> | ||
{| class="wikitable" border="0" cellspacing=" | |||
|- | {| class="wikitable" border="0" cellspacing="5" | ||
| <u>Sample</u> || <u>OD 260</u> || <u>260/280</u> || <u>ng/μL</u> | |- | ||
| <u>Sample</u> || <u>OD 260</u> || <u>260/280</u> || <u>ng/μL</u> || <u>Vol. to use for cDNA synth.</u> | |||
|- | |||
| 1. ### || ### || ### || ### || ### μL (### μg) | |||
|- | |||
| 2. ### || ### || ### || ### || ### μL (### μg) | |||
|} | |||
'''oligo(dT) Primer annealing''' | |||
{| class="wikitable" border="0" cellspacing="5" | |||
|- | |||
| <u>Reagent</u> || <u>Vol</u> | |||
|- | |||
| total RNA (up to 2μg) || up to 8 μL | |||
|- | |- | ||
| | | 50 μM oligo(dT) primer || 1.0 | ||
|- | |- | ||
| | | 10 mM dNTP mix || 1.0 | ||
|- | |||
| DEPC-treated water || = 8.0 - vol. total RNA | |||
|- | |||
| || 10.0 μL | |||
|} | |} | ||
--> Incubate at 65°C/ 5 min. Immediately place on ice for 1 min. | |||
'''cDNA synthesis mix''' | |||
* Total reactions = 4 <!-- Replace N with the total number of reactions! --> | |||
* Samples: | |||
# K562 1.1 (E004) | # K562 1.1 (E004) | ||
# K562 1.1 (E005) | # K562 1.1 (E005) | ||
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# K562 2.1 (C005) | # K562 2.1 (C005) | ||
{| class="wikitable" border="0" cellspacing=" | {| class="wikitable" border="0" cellspacing="5" | ||
|- | |- | ||
| | | <u>Reagent</u> || <u>Single rxn.</u> || Mix (x4) | ||
|- | |- | ||
| | | 10x RT buffer || 2.0 || 8.0 | ||
|- | |- | ||
| | | 25 mM MgCl<sub>2</sub> || 4.0 || 16.0 | ||
|- | |- | ||
| | | 0.1 M DDT || 2.0 || 8.0 | ||
|- | |- | ||
| | | RNaseOUT || 1.0 || 4.0 | ||
|- | |||
| SuperScript III RT || 1.0 || 4.0 | |||
|- | |- | ||
| || | | || 10.0 μL || 40.0 μL | ||
|} | |} | ||
--> Aliquot 10 μL of mix into 8-tube strip<br> | |||
--> Add annealing rxn. into each 10 μL aliquot<br> | |||
--> PCR machine: 50°C/ 50 min., 80°C/ 5 min., ice<br> | |||
--> Add 1.0 μL RNase H, incubate at 37°C/ 20 min.<br> | |||
--> Store at -20°C | |||
Revision as of 12:41, 4 June 2014
Pc-TF Genomics | <html><img src="/images/9/94/Report.png" border="0" /></html> Main project page <html><img src="/images/c/c3/Resultset_previous.png" border="0" /></html>Previous entry<html> </html>Next entry<html><img src="/images/5/5c/Resultset_next.png" border="0" /></html> | ||||||||||||||||||||||||||||||||||||||||||||||||
06/04/14
cDNA synthesis: K562
--> Incubate at 65°C/ 5 min. Immediately place on ice for 1 min.
--> Aliquot 10 μL of mix into 8-tube strip
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