User:Konrad U Foerstner/Tools and procedures: Difference between revisions
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* [http://transterm.cbcb.umd.edu/ TransTerm] | * [http://transterm.cbcb.umd.edu/ TransTerm] | ||
== Python == | |||
* [http://www.scipy.or NumPy/SciPy] | |||
* [http://pandas.pydata.org/ panda] | |||
* [http://statsmodels.sourceforge.net/ statsmodels] | |||
* [http://www.crummy.com/software/BeautifulSoup/ beautiful soup] | |||
* [http://biopython.org/ BioPython] | |||
Revision as of 01:52, 23 November 2012
SNP calling
With Samtools
- Important. Base alignment quality (BAQ) is switched on per default and very (too) strict 5 Things to Know About SAMtools Mpileup
TSS prediction
- TSSi (untested)
Pathway visualization
- iPath2.0 (by Takuji!) - the modified and original maps can be downloaded as SVG (e.g. full metabolic map)
- KEGG Mapper (untested)
