User:Konrad U Foerstner/Tools and procedures
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SNP calling
With Samtools
- Important. Base alignment quality (BAQ) is switched on per default and very (too) strict 5 Things to Know About SAMtools Mpileup
TSS prediction
- TSSi (untested)
Pathway visualization
- iPath2.0 (by Takuji!)
- KEGG Mapper (untested)