User:Kun Zhang: Difference between revisions

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==Research Interests==
==Research Interests==
==Publications==
==Publications==
*Kowalchuk G.A., Speksnijder A.G., Zhang K., Goodman R.M., van Veen J.A. (2007) Finding the needles in the metagenome haystack. Microb. Ecol. 53:475-85
#Kowalchuk GA, Speksnijder AG, Zhang K, Goodman RM, van Veen JA. (2007) Finding the needles in the metagenome haystack. Microb. Ecol. 53:475-85
*Zhang K., Lott S.T., Jin L., Killary A.M. (2007) Fine mapping of the NRC-1 tumor suppressor locus within chromosome 3p12. Biochem. Biophys. Res. Commun. 360:531-538
#Zhang K, Lott ST, Jin L, Killary AM. (2007) Fine mapping of the NRC-1 tumor suppressor locus within chromosome 3p12. Biochem. Biophys. Res. Commun. 360:531-538
*Zhang K, Martiny AC, Reppas NB, Barry KW, Malek J, Chisholm SW, Church GM. (2006) Sequencing genomes from single cells by polymerase cloning. Nature Biotechnology 24:680-686
#Zhang K, Martiny AC, Reppas NB, Barry KW, Malek J, Chisholm SW, Church GM. (2006) Sequencing genomes from single cells by polymerase cloning. Nature Biotechnology 24:680-686
*Zhang K, Zhu J, Shendure J, Porreca GJ, Aach JD, Mitra RD, Church GM. (2006) Long-range polony haplotyping of individual human chromosome molecules. Nature Genetics 38:382-387.[Supporting website].
#Zhang K, Zhu J, Shendure J, Porreca GJ, Aach JD, Mitra RD, Church GM. (2006) Long-range polony haplotyping of individual human chromosome molecules. Nature Genetics 38:382-387.[Supporting website].
*Shendure J, Porreca GJ, Reppas NB, Lin X, McCutcheon JP, Rosenbaum AM, Wang MD, Zhang K, Mitra RD, Church GM. (2005) Accurate multiplex polony sequencing of an evolved bacterial genome. Science 309:1728-1732.
#Shendure J, Porreca GJ, Reppas NB, Lin X, McCutcheon JP, Rosenbaum AM, Wang MD, Zhang K, Mitra RD, Church GM. (2005) Accurate multiplex polony sequencing of an evolved bacterial genome. Science 309:1728-1732.
*Zhang K, and Jin L. (2003) HaploBlockFinder: haplotype block analyses. Bioinformatics 19:1300-1301  
#Zhang K, and Jin L. (2003) HaploBlockFinder: haplotype block analyses. Bioinformatics 19:1300-1301  
*Zhang K, Akey JM (joined first author), Wang N, Xiong M, Chakraborty R, Jin L.(2003) Randomly distributed crossovers may generate block-like pattern of linkage disequibrium: An act of genetic drift. Hum. Genet. 113: 51-59.  
#Zhang K, Akey JM (joined first author), Wang N, Xiong M, Chakraborty R, Jin L.(2003) Randomly distributed crossovers may generate block-like pattern of linkage disequibrium: An act of genetic drift. Hum. Genet. 113: 51-59.  
*Akey JM, Zhang K, Xiong M, and Jin L. (2003) The effect of single nucleotide polymorphism identification strategies on estimates of linkage disequilibrium. Mol Biol Evol. 20: 232-242.   
#Akey JM, Zhang K, Xiong M, and Jin L. (2003) The effect of single nucleotide polymorphism identification strategies on estimates of linkage disequilibrium. Mol Biol Evol. 20: 232-242.   
*Akey JM, Zhang G, Zhang K, Jin L and Shriver M. (2002) Interrogating a high-density SNP map for signatures of natural selection. Genome Res. 12: 1805-1814.  
#Akey JM, Zhang G, Zhang K, Jin L and Shriver M. (2002) Interrogating a high-density SNP map for signatures of natural selection. Genome Res. 12: 1805-1814.  
*Wang N, Akey JM, Zhang K, Chakraborty R, Jin L. (2002)  Distribution of recombination crossovers and the origin of haplotype blocks: the interplay of population history, recombination, and mutation. Am. J. Hum. Genet. 71: 1227-1234.  
#Wang N, Akey JM, Zhang K, Chakraborty R, Jin L. (2002)  Distribution of recombination crossovers and the origin of haplotype blocks: the interplay of population history, recombination, and mutation. Am. J. Hum. Genet. 71: 1227-1234.  
*Akey DT, Akey JM, Zhang K, Jin L. (2002) Assaying DNA methylation based on high-throughput melting curve approaches. Genomics 80: 376-384.  
#Akey DT, Akey JM, Zhang K, Jin L. (2002) Assaying DNA methylation based on high-throughput melting curve approaches. Genomics 80: 376-384.  
*Akey JM, Zhang K (joined first author), Xiong M, Doris P, Jin L. (2001) The effect that genotyping errors have on the robustness of common linkage-disequilibrium measures. Am. J. Hum. Genet., 68:1447-1456.
#Akey JM, Zhang K (joined first author), Xiong M, Doris P, Jin L. (2001) The effect that genotyping errors have on the robustness of common linkage-disequilibrium measures. Am. J. Hum. Genet., 68:1447-1456.

Revision as of 16:52, 28 July 2007

Kun Zhang, Ph.D.
Assistant Professor
Department of Bioengineering
University of California, San Diego
9500 Gilman Drive, MC0412
La Jolla, CA 92903

Education

  • Post-doc, Department of Genetics, Harvard Medical School
  • Ph.D., Human and Molecular Genetics, University of Texas-Houston/MD-Anderson Cancer Center
  • M.S., Neuroscience, Fudan University, China
  • B.S., Biophysics, Fudan University, China

Research Interests

Publications

  1. Kowalchuk GA, Speksnijder AG, Zhang K, Goodman RM, van Veen JA. (2007) Finding the needles in the metagenome haystack. Microb. Ecol. 53:475-85
  2. Zhang K, Lott ST, Jin L, Killary AM. (2007) Fine mapping of the NRC-1 tumor suppressor locus within chromosome 3p12. Biochem. Biophys. Res. Commun. 360:531-538
  3. Zhang K, Martiny AC, Reppas NB, Barry KW, Malek J, Chisholm SW, Church GM. (2006) Sequencing genomes from single cells by polymerase cloning. Nature Biotechnology 24:680-686
  4. Zhang K, Zhu J, Shendure J, Porreca GJ, Aach JD, Mitra RD, Church GM. (2006) Long-range polony haplotyping of individual human chromosome molecules. Nature Genetics 38:382-387.[Supporting website].
  5. Shendure J, Porreca GJ, Reppas NB, Lin X, McCutcheon JP, Rosenbaum AM, Wang MD, Zhang K, Mitra RD, Church GM. (2005) Accurate multiplex polony sequencing of an evolved bacterial genome. Science 309:1728-1732.
  6. Zhang K, and Jin L. (2003) HaploBlockFinder: haplotype block analyses. Bioinformatics 19:1300-1301
  7. Zhang K, Akey JM (joined first author), Wang N, Xiong M, Chakraborty R, Jin L.(2003) Randomly distributed crossovers may generate block-like pattern of linkage disequibrium: An act of genetic drift. Hum. Genet. 113: 51-59.
  8. Akey JM, Zhang K, Xiong M, and Jin L. (2003) The effect of single nucleotide polymorphism identification strategies on estimates of linkage disequilibrium. Mol Biol Evol. 20: 232-242.
  9. Akey JM, Zhang G, Zhang K, Jin L and Shriver M. (2002) Interrogating a high-density SNP map for signatures of natural selection. Genome Res. 12: 1805-1814.
  10. Wang N, Akey JM, Zhang K, Chakraborty R, Jin L. (2002) Distribution of recombination crossovers and the origin of haplotype blocks: the interplay of population history, recombination, and mutation. Am. J. Hum. Genet. 71: 1227-1234.
  11. Akey DT, Akey JM, Zhang K, Jin L. (2002) Assaying DNA methylation based on high-throughput melting curve approaches. Genomics 80: 376-384.
  12. Akey JM, Zhang K (joined first author), Xiong M, Doris P, Jin L. (2001) The effect that genotyping errors have on the robustness of common linkage-disequilibrium measures. Am. J. Hum. Genet., 68:1447-1456.
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