User:Lindenb/Notebook/UMR915/20101014

20101013        Top        20101015       

• presentation Quentin
• improving sigframe
• asked snapshot from Integragen/Melanie

From http://biostar.stackexchange.com/questions/2903 , Brad Chapmans suggest http://bioinformatics.bc.edu/marthlab/GigaBayes as a SNP caller.

Belgium

Downloaded http://www.clcbio.com/index.php?id=1292 to get visible data for individual 1

Coverages

Individual 1:

 Mean coverage                          18,93
 Total bases in targeted regions    3.456.979
 1x                                   90,60%
 5x                                   68,09%
 10x                                  49,68%
 20x                                  33,75%
 40x                                  16,28%
 80x                                   0,76%
 100x                                  0,07%

Individual 2:

primary_target_region coverage report.pdf

 Mean coverage                          34,81
 Total bases in targeted regions    3.456.979
 1x                                   96,76%
 5x                                   88,27%
 10x                                  73,18%
 20x                                  51,10%
 40x                                  33,79%
 80x                                  12,34%
 100x                                  4,28%

capture_target coverage report.pdf

 Mean coverage                       27,67
 Total bases in targeted regions 5.085.943
 1x                                92,46%
 5x                                79,76%
 10x                               63,03%
 20x                               41,00%
 40x                               24,52%
 80x                                8,54%
 100x                               2,95%