User:Lindenb/Notebook/UMR915/20101025: Difference between revisions

From OpenWetWare
Jump to navigationJump to search
(New page: {{PLNB|20101022|20101026}} ==Project Integragen== Generating input for PPH2 cat AllChrom.exome.snp.*tion |cut -d ' ' -f 1,2,7,11 |\ awk '{printf("%s:%d %s",$2,$1,$4); for(i=1;i<=...)
 
Line 8: Line 8:


wc = 71691
wc = 71691
code for analyzing data: http://code.google.com/p/code915/source/browse/trunk/tools/src/java/fr/inserm/umr915/tools/Integragen20101022.java

Revision as of 02:18, 25 October 2010

20101022        Top        20101026       


Project Integragen

Generating input for PPH2 

 cat AllChrom.exome.snp.*tion |cut -d '     ' -f 1,2,7,11 |\
  awk '{printf("%s:%d %s",$2,$1,$4); for(i=1;i<= length($3);i++) {c=substr($3,i,1);if(c==$4) continue; printf("/%s",c);} printf("\n");}' |\
  grep -v "chrom" | sort | uniq

wc = 71691

code for analyzing data: http://code.google.com/p/code915/source/browse/trunk/tools/src/java/fr/inserm/umr915/tools/Integragen20101022.java

Retrieved from "https://openwetware.org/mediawiki/index.php?title=User:Lindenb/Notebook/UMR915/20101025&oldid=467129"