User:Lindenb/Notebook/UMR915/20101116: Difference between revisions
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(New page: {{PLNB|2010115|20101117}} =IG/Cedric= Attention IG starts its indexing for cDNA/prot from '''0''':<pre>$1 Position.Build36 : $3 A : 0 $4 C : 2 $5 G : 0 $6 T : 0 $7 modified_call : C $8 to...) |
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Revision as of 08:36, 16 November 2010
IG/Cedric
Attention IG starts its indexing for cDNA/prot from 0:
$1 Position.Build36 : $3 A : 0 $4 C : 2 $5 G : 0 $6 T : 0 $7 modified_call : C $8 total : 2 $9 used : 2 $10 score : 7.00 $11 reference : T $12 type : SNP_diff.douteux $13 Freq.HTZ.42Exomes : 11.9 $14 Freq.HOM.42Exomes : 59.52 $20 strand : + $21 nbre.exon : 18 $24 typeannot : in-cds-fauxsens $25 type.pos : Exon 3 $26 index.cdna : 1 $27 index.prot : 0 ### <--- first Methionine indexed at 0 $28 Taille.cdna : 6155 $29 Intron.start : $30 Intron.end : $31 codon.wild : ATG $32 aa.wild : M $33 codon.mut : ACG $34 aa.mut : T $35 cdna.wild : A T GGACCCCTCTGCCCACAGGTCCCGAGCAGC... $36 cDNA.mut : A C GGACCCCTCTGCCCACAGGTCCCGAGCAGCC.. $37 prot.wild : M DPSAHRSRAAPPNMDPDPQAGVQVGMRVVRG.. $38 prot.mut : T DPSAHRSRAAPPNMDPDPQAGVQVGMRVVRGV.. $39 mirna : no $40 region.splice : !N/A