User:Lindenb/Notebook/UMR915/20101119: Difference between revisions

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==GATK==
==GATK==
updating from version 1.0.3471 to 1.0.4705
updating from version 1.0.3471 to 1.0.4705
the new version has changed the way it scans the reference sequence. see also Brad Chapman's observation http://friendfeed.com/yokofakun/a0715b86/updated-gatk-it-doesn-t-want-my-reference-genome

Revision as of 04:28, 19 November 2010

2010118        Top        2010122       


indexing the genome

adding the whole sequence of the chromosomes in the BDB. 

 Found >chr10 (overflows: 0 keys:0 time=0mins)
 Found >chr10_random (overflows: 0 keys:914598 time=4mins)
 Found >chr11 (overflows: 0 keys:914688 time=4mins)
 (...)

GATK

updating from version 1.0.3471 to 1.0.4705

the new version has changed the way it scans the reference sequence. see also Brad Chapman's observation http://friendfeed.com/yokofakun/a0715b86/updated-gatk-it-doesn-t-want-my-reference-genome

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