User:Lindenb/Notebook/UMR915/20101122: Difference between revisions

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Revision as of 02:46, 22 November 2010

20101119        Top        20101121       


Cedric/Integragen

coverage exon ? 

 /usr/local/package/bwa-0.5.7/bwa index -a is exon.fa
 /usr/local/package/bwa-0.5.7/bwa aln  -l 32 -q 15 -t 10  -fexon1.aln exon.fa s_5_1_sequence.txt
 /usr/local/package/bwa-0.5.7/bwa aln  -l 32 -q 15 -t 10  -fexon2.aln exon.fa s_5_2_sequence.txt
 /usr/local/package/bwa-0.5.7/bwa sampe -a 600 exon.fa exon1.aln  exon2.aln  s_5_1_sequence.txt s_5_2_sequence.txt  >  sampe.sam
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