User:Lindenb/Notebook/UMR915/20101203: Difference between revisions
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cleaning day. | cleaning day. | ||
==belgium== | |||
get 100G data: | |||
<pre>curl -s --proxy cache.XXXXXXXXXXX:1111 "ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/2010_11/ALL.2of4intersection.20100804.sites.vcf.gz" | gunzip -c |\ | |||
awk -F ' ' '{if(($1=="X1" && int($2)>=1 && int($2) <=2) || ($1=="X2" && int($2) >= 1 && int($2)<=2)) print $0;}' > /home/lindenb/belgium.100G.vcf</pre> | |||
Revision as of 07:34, 3 December 2010
cleaning day.
belgium
get 100G data:
curl -s --proxy cache.XXXXXXXXXXX:1111 "ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/2010_11/ALL.2of4intersection.20100804.sites.vcf.gz" | gunzip -c |\
awk -F ' ' '{if(($1=="X1" && int($2)>=1 && int($2) <=2) || ($1=="X2" && int($2) >= 1 && int($2)<=2)) print $0;}' > /home/lindenb/belgium.100G.vcf