User:Lindenb/Notebook/UMR915/20110714: Difference between revisions

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(New page: {{PLNB|20110704|20110714}} #allonzenfan =playing with dbNSFP= <pre>curl -s "http://dl.dropbox.com/u/17001647/dbNSFP/dbNSFP1.1.chr1-22XY.zip" | funzip -t | head -n1 |tr " " "\n" | ca...)
(No difference)

Revision as of 02:04, 14 July 2011

20110704        Top        20110714       


  1. allonzenfan

playing with dbNSFP

curl -s "http://dl.dropbox.com/u/17001647/dbNSFP/dbNSFP1.1.chr1-22XY.zip" | funzip -t | head -n1 |tr "       " "\n" | cat -n

     1	#chr
     2	pos(1-based)
     3	ref
     4	alt
     5	aaref
     6	aaalt
     7	hg19pos(1-based)
     8	genename
     9	geneid
    10	CCDSid
    11	refcodon
    12	codonpos
    13	fold-degenerate
    14	aapos
    15	cds_strand
    16	LRT_Omega
    17	PhyloP_score
    18	PlyloP_pred
    19	SIFT_score
    20	SIFT_pred
    21	Polyphen2_score
    22	Polyphen2_pred
    23	LRT_score
    24	LRT_pred
    25	MutationTaster_score
    26	MutationTaster_pred
    27	Ancestral_allele
    28	UniSNP_ids
    29	Allele_freq
    30	Alt_gene_name
    31	dbXrefs
    32	Descriptive_gene_name
    33	1000_genomes_high_coverage
    34	1000_genomes_low_coverage
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