User:Lindenb/Notebook/UMR915/2012/02/27: Difference between revisions
From OpenWetWare
(→Daily) |
(→Daily) |
||
| Line 29: | Line 29: | ||
</pre> | </pre> | ||
=Install Annotations:= | |||
<pre> | |||
$ R | |||
> library("iterators",lib="lib") | |||
(...) | |||
> library("multicore",lib="lib") | |||
> library("doMC",lib="lib") | |||
(...) | |||
> library("readDepth",lib="lib") | |||
> getAnnotations(50,"male", genome="hg19") | |||
</pre> | |||
<!-- ##### DO NOT edit below this line unless you know what you are doing. ##### --> | <!-- ##### DO NOT edit below this line unless you know what you are doing. ##### --> | ||
Revision as of 03:54, 27 February 2012
 Project name
|
<html><img src="/images/9/94/Report.png" border="0" /></html> Main project page <html><img src="/images/c/c3/Resultset_previous.png" border="0" /></html>Previous entry<html> </html>Next entry<html><img src="/images/5/5c/Resultset_next.png" border="0" /></html> |
Daily
mkdir lib
> install.packages(c("foreach"),"lib")
(...)
> install.packages(c("methods"),"lib")
(...)
> source("http://bioconductor.org/biocLite.R")
BioC_mirror = http://www.bioconductor.org
Change using chooseBioCmirror().
> biocLite(c("doMC","IRanges","DNAcopy"),lib="lib")
Using R version 2.11.0, biocinstall version 2.6.10.
Installing Bioconductor version 2.6 packages:
[1] "doMC" "IRanges" "DNAcopy"
(...)
$ R CMD INSTALL -l lib readDepth.tgz
Install Annotations:$ R
> library("iterators",lib="lib")
(...)
> library("multicore",lib="lib")
> library("doMC",lib="lib")
(...)
> library("readDepth",lib="lib")
> getAnnotations(50,"male", genome="hg19")
| |
