User:Lindenb/Notebook/UMR915/2012/03/09
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==Daily== | ==Daily== | ||
* [[User:lindenb/Notebook/UMR915/20100607|20100607]] | * [[User:lindenb/Notebook/UMR915/20100607|20100607]] | ||
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| + | stackoverflow error in bwa aln. | ||
| + | Is it a problem of version ? rebuilding the genome index: | ||
| + | <pre>(...)[BWTIncConstructFromPacked] 670 iterations done. 6154206942 characters processed. | ||
| + | [BWTIncConstructFromPacked] 680 iterations done. 6177547390 characters processed. | ||
| + | [bwt_gen] Finished constructing BWT in 687 iterations. | ||
| + | [bwa_index] 5783.06 seconds elapse. | ||
| + | [bwa_index] Update BWT... 31.53 sec | ||
| + | [bwa_index] Pack forward-only FASTA... 61.74 sec | ||
| + | [bwa_index] Construct SA from BWT and Occ... 2587.15 sec | ||
| + | [main] Version: 0.6.1-r104 | ||
| + | [main] CMD: /usr/local/package/bwa-0.6.1/bwa index -a bwtsw /GENOTYPAGE/data/pubdb/ucsc/hg19/chromosomes/hg19.fa | ||
| + | [main] Real time: 8550.873 sec; CPU: 8535.225 sec</pre> | ||
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Dailystackoverflow error in bwa aln. Is it a problem of version ? rebuilding the genome index: (...)[BWTIncConstructFromPacked] 670 iterations done. 6154206942 characters processed. [BWTIncConstructFromPacked] 680 iterations done. 6177547390 characters processed. [bwt_gen] Finished constructing BWT in 687 iterations. [bwa_index] 5783.06 seconds elapse. [bwa_index] Update BWT... 31.53 sec [bwa_index] Pack forward-only FASTA... 61.74 sec [bwa_index] Construct SA from BWT and Occ... 2587.15 sec [main] Version: 0.6.1-r104 [main] CMD: /usr/local/package/bwa-0.6.1/bwa index -a bwtsw /GENOTYPAGE/data/pubdb/ucsc/hg19/chromosomes/hg19.fa [main] Real time: 8550.873 sec; CPU: 8535.225 sec
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