User:Lindenb/Notebook/UMR915/2012/04/02: Difference between revisions
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(→DJANGO) |
(→DJANGO) |
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sudo apt-get install python-django | sudo apt-get install python-django | ||
start a project | start a new project | ||
$ django-admin startproject gene2pubmed | $ django-admin startproject gene2pubmed | ||
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gene2pubmed/manage.py | gene2pubmed/manage.py | ||
gene2pubmed/settings.py</pre> | gene2pubmed/settings.py</pre> | ||
testing the development server: | |||
<pre>O$ python gene2pubmed/manage.py runserver | |||
Validating models... | |||
0 errors found | |||
Django version 1.3, using settings 'gene2pubmed.settings' | |||
Development server is running at http://127.0.0.1:8000/ | |||
Quit the server with CONTROL-C. | |||
[02/Apr/2012 07:57:11] "GET / HTTP/1.1" 200 2061</pre> | |||
__NOTOC__ | __NOTOC__ | ||
Revision as of 05:59, 2 April 2012
 Project name
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<html><img src="/images/9/94/Report.png" border="0" /></html> Main project page <html><img src="/images/c/c3/Resultset_previous.png" border="0" /></html>Previous entry<html> </html>Next entry<html><img src="/images/5/5c/Resultset_next.png" border="0" /></html> |
Dailyvariant_effect_predictor.plFix for proxyreplace unless(getstore($url, $target_file) == 200) by my $status = system("/usr/bin/curl --proxy 'http://proxy:3128' -o '$target_file' -L '$url'");
(...)
my $status2 = system("/usr/bin/curl --proxy 'http://proxy:3128' -o '$target_file' -L --create-dirs '$BIOPERL_URL,'");
in the directory 'Bio': Align AlignIO Annotation Assembly Biblio bioperl-1.2.3 Cluster ClusterIO Coordinate Das DB EnsEMBL Event Expression Factory Graphics Index LiveSeq Location Map MapIO Matrix Ontology OntologyIO Phenotype Root Search SearchIO Seq SeqFeature SeqIO Structure Symbol Taxonomy tmp Tools Tree TreeIO Variation
Runperl variant_effect_predictor.pl --regulatory --sift=b --polyphen=b --regulatory --input_file 20120327.rs.vcf.gz --format vcf -o 20120402.vcf --vcf
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DJANGO
install ubuntu:
sudo apt-get install python-django
start a new project
$ django-admin startproject gene2pubmed
$ find gene2pubmed/ gene2pubmed/ gene2pubmed/urls.py gene2pubmed/__init__.py gene2pubmed/manage.py gene2pubmed/settings.py
testing the development server:
O$ python gene2pubmed/manage.py runserver Validating models... 0 errors found Django version 1.3, using settings 'gene2pubmed.settings' Development server is running at http://127.0.0.1:8000/ Quit the server with CONTROL-C. [02/Apr/2012 07:57:11] "GET / HTTP/1.1" 200 2061
