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| [[Image:LindsayClarkface2.jpg|thumb|left|Lindsay V. Clark]] | | [[Image:LindsayClarkface2.jpg|thumb|left|Lindsay V. Clark]] |
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| '''Postdoctoral Research Associate, Plant Population Genetics''' | | '''Research Specialist, Plant Population Genetics''' |
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| '''Energy Biosciences Institute''' | | '''Department of Crop Sciences''' |
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| '''University of Illinois, Urbana-Champaign''' | | '''University of Illinois, Urbana-Champaign''' |
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| == Research and Personal Info == | | == Research and Personal Info == |
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| I am a postdoc studying the genetic diversity and population structure of ''Miscanthus'', a perennial grass being developed as a bioenergy crop, under [http://cropsci.illinois.edu/directory/esacks Dr. Erik Sacks] at the University of Illinois, Urbana-Champaign. | | I am a postdoc studying the genetic diversity and population structure of ''Miscanthus'', a perennial grass being developed as a bioenergy crop, in the lab of [http://cropsci.illinois.edu/directory/esacks Dr. Erik Sacks] at the University of Illinois, Urbana-Champaign. |
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| I recently finished my Ph.D. (September 2011) in the [[UC Davis Genetics Graduate Group|Genetics Graduate Group at UC Davis]] as a member of the [[Jasieniuk]] lab in the Department of Plant Sciences. My dissertation research was on the evolution of invasiveness in blackberry (''Rubus''), particularly relating to hybridization and asexual reproduction. I have also written software in R for the analysis of polyploid data.
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| I graduated from Dartmouth College in 2004, having majored in Genetics, Cell & Developmental Biology and minored in Chemistry. From June 2002 to June 2004 I did my undergraduate thesis research in [http://www.dartmouth.edu/~tjack/ Thomas Jack's lab], where I worked on developing knockout mutants for a gene family putatively involved in floral development in ''Arabidopsis''.
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| From November 2004 - July 2006 I worked at the [http://www.ars.usda.gov/Main/site_main.htm?modecode=19-10-10-00 Grape Genetics Research Unit] in Geneva, NY. Under the direction of Amanda Garris, I worked on gene cloning and QTL mapping towards an understanding of light detection and winter dormancy in grapevine.
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| [[Image:plantintube.JPG|200 px|right]]
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| Contact: [[Special:Emailuser/Lindsay_V._Clark|email]] | | Contact: [[Special:Emailuser/Lindsay_V._Clark|email]] |
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| [http://www.researcherid.com/rid/B-3165-2008 ResearcherID]
| | This wiki page used to be my personal homepage. Please visit my new website at https://sites.google.com/site/lindsayvclarkgenetics/. |
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| [http://ucdavis.academia.edu/LindsayClark Academia.edu profile]
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| [[Media:lvclark_CV_2011_December13.pdf|Curriculum Vitae]]
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| == Publications ==
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| * Lindsay V. Clark and Marie Jasieniuk (2011) "POLYSAT: an R package for polyploid microsatellite analysis." Molecular Ecology Resources 11(3):562-566. [[doi:10.1111/j.1755-0998.2011.02985.x]]
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| * Lindsay V. Clark and Marie Jasieniuk (2012) "Spontaneous hybrids between native and exotic ''Rubus'' in the Western United States produce offspring both by apomixis and by sexual recombination." Heredity 109(5):320-328. [[doi:10.1038/hdy.2012.45]]
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| * Lindsay V. Clark, Katherine J. Evans, and Marie Jasieniuk "Origins and distribution of invasive ''Rubus fruticosus'' L. agg. (Rosaceae) clones in the Western United States." Biological Invasions (in press). [[doi:10.1007/s10530-012-0369-8]]
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| *Amanda Garris, Lindsay Clark, Chris Owens, Steven McKay, James Luby, Kathy Mathiason, and Anne Fennell (2009) [http://journal.ashspublications.org/cgi/content/abstract/134/2/261 "Mapping of Photoperiod-Induced Growth Cessation in the Wild Grape ''Vitis riparia'' Michx."] Journal of the American Society for Horticultural Science 134:261-272.
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| == Software == | | == Software == |
| [[polysat]]: tools for polyploid microsatellite analysis
| | '''[https://github.com/lvclark/polysat/wiki polysat]: tools for polyploid microsatellite analysis''' |
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| ===Handy scripts===
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| Convert TASSEL's HapMap format to adegenet's genind format: [[Media:hapMap2genind.R.txt]]
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| ==Presentations==
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| *"Using molecular markers to investigate invasive ''Rubus'' and genetic diversity of ''Miscanthus''". Invited seminar speaker, Western Kentucky University Biology Department, September 7, 2012.
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| *[http://conferences.igb.illinois.edu/panamerican/sites/conferences.igb.illinois.edu.panamerican/files/u4/Clark_%20Bioenergy%20Congress%20presentation%202012.pdf "Genetic diversity and population structure of ''Miscanthus'' in Japan"] at the 3rd Pan American Congress on Plants and Bioenergy, Champaign, Illinois, June 17, 2012.
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| *"Polyploid data analysis, and how to gently transition from software user to software developer" for UC Davis Ecological Genetics grad course, February 28, 2011 [[Media:LVC_PHR242_110228.pdf | PDF]]
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| *“Hybridization of native and invasive blackberries in California” at UC Davis Weed Day, July 17, 2008.
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| ==Posters==
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| *[http://www.intl-pag.org/19/abstracts/P03b_PAGXIX_149.html "Microsatellites distinguish sexual vs. apomictic reproduction in spontaneous ''Rubus'' hybrids"] at Plant and Animal Genome XIX, January 15-19, 2011. [[Media:LVCpag2011.pdf | PDF]]
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| *[http://www.intl-pag.org/18/abstracts/P03a_PAGXVIII_125.html "Hybridization Between Native And Introduced ''Rubus'' In California And The Pacific Northwest"] at Plant and Animal Genome XVIII, January 9-13, 2010. [[Media:LVCpag2010.pdf | PDF]]
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| *[http://www.cal-ipc.org/symposia/archive/pdf/2008/posterClark.pdf “Hybridization between invasive and native blackberries (''Rubus'') in California”] at California Invasive Plant Council Symposium, October 2-4, 2008.
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| ==Awards==
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| *Plant Sciences Departmental Research Assistantship
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| *Jastro-Shields Research Grant
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| *Department of Plant Sciences Graduate Student Travel Award
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| *California Weed Science Society Scholarship
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| ==Teaching experience==
| | '''[https://github.com/lvclark/tagdigger tagdigger]: Search for tags in FASTQ files from GBS or RAD-seq |
| *Associate Instructor, Plant Genetics and Biotechnology Laboratory, UC Davis Department of Plant Sciences, Summer 2009
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| *Guest lecturer, Ecological Genetics, UC Davis Ecology Graduate Group, Winter 2011
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| *Teaching assistant, Principles of Genetics Laboratory, UC Davis Department of Molecular and Cellular Biology, Winter 2010
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| *Teaching assistant, Genes and Gene Expression, UC Davis Department of Molecular and Cellular Biology, Fall 2009, Winter 2011
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| *Teaching assistant, Human Heredity, UC Davis Department of Molecular and Cellular Biology, Spring 2007, Spring 2009
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| *Teaching assistant, Plant Genetics and Biotechnology Laboratory, UC Davis Department of Plant Sciences, Winter 2009
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| *Undergraduate teaching assistant, Molecular Biology Lab, Dartmouth College Department of Biological Sciences, Summer 2003
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| ==Protocols== | | ==Protocols== |
