User:Lorenzo Pasotti: Difference between revisions

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==Contact Info==
==Contact Info==
[[Image:OWWEmblem.png|thumb|right|Lorenzo Pasotti (an artistic interpretation)]]
[[Image:LorenzoOWW.JPG|thumb|right|Lorenzo Pasotti]]


*Lorenzo Pasotti
*Lorenzo Pasotti
*University of Pavia
*University of Pavia
*via Ferrata 3, Pavia I-27100, Italy
*via Ferrata 3, Pavia I-27100, Italy
*[[Special:Emailuser/Lorenzo Pasotti|Email me through OpenWetWare]]
*lorenzo dot pasotti at unipv dot it


I work in the [[Your Lab]] at XYZ University.
I work on synthetic biology in the Laboratory for Biomedical Informatics and in the molecular biology lab of the Centre for Tissue Engineering (see [[Magni]] lab on OWW), University of Pavia.


==Education==
==Education==
<!--Include info about your educational background-->
<!--Include info about your educational background-->
* Year, PhD, Institute
* 2012-, Postdoc researcher, University of Pavia
* Year, MS, Institute
* Feb-Sep 2011, visiting PhD student, School of Biological Sciences, University of Edinburgh, UK
* Year, BS, Institute
* 2008-2012, PhD, Bioengineering and Bioinformatics, University of Pavia
* 2006-2008, MS, Biomedical Informatics, University of Pavia
* 2003-2006, BS, Biomedical Engineering, University of Pavia


==Research interests==
==Research interests==
<!-- Feel free to add brief descriptions to your research interests as well -->
<!-- Feel free to add brief descriptions to your research interests as well -->
# Interest 1
# Modularity of biological parts
# Interest 2
# Pathway engineering for biofuel production
# Interest 3
# Bottom-up design and modelling of gene networks


==Publications==
==Publications==
<!-- Replace the PubMed ID's ("pmid=#######") below with the PubMed ID's for your publications.  You can add or remove lines as needed -->
<!-- Replace the PubMed ID's ("pmid=#######") below with the PubMed ID's for your publications.  You can add or remove lines as needed -->
<biblio>
#Pasotti L, Zucca S (2014) Advances and computational tools towards predictable design in biological engineering. ''Computational and Mathematical Methods in Medicine'', Article ID: 369681.
#Paper1 pmid=6947258
#Politi N, Pasotti L, Zucca S, Casanova M, Micoli G, Cusella De Angelis MG, Magni P (2014) Half-life measurements of chemical inducers for recombinant gene expression. ''Journal of Biological Engineering'', 8:5. [http://www.jbioleng.org/content/8/1/5 Link]
#Paper2 pmid=13718526
#Pasotti L, Zucca S, Magni P (2013) Modelling for synthetic biology. Book chapter in: ''Modeling Methodology for Physiology and Medicine: Second Edition'' (Elsevier), p.545-564. DOI: 10.1016/B978-0-12-411557-6.00023-9.
// leave a comment about a paper here
#Zucca S, Pasotti L, Politi N, Cusella De Angelis MG, Magni P (2013) A standard vector for the chromosomal integration and characterization of BioBrickTM parts in ''Escherichia coli''. ''Journal of Biological Engineering'', 7:12. [http://www.jbioleng.org/content/7/1/12 Link]
#Book1 isbn=0879697164
#Pasotti L, Politi N, Zucca S, Cusella De Angelis MG, Magni P (2012) Bottom-up engineering of biological systems through standard bricks: A modularity study on basic parts and devices. ''PLoS ONE'', 7(7). [http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0039407 Link]
</biblio>
#Zucca S, Pasotti L, Mazzini G, Cusella De Angelis MG, Magni P (2012) Characterization of an inducible promoter in different DNA copy number conditions. ''BMC Bioinformatics'', 13(Suppl 4): S11. [http://www.biomedcentral.com/1471-2105/13/S4/S11 Link]
#Pasotti L, Quattrocelli M, Galli D, De Angelis MG, Magni P (2011) Multiplexing and demultiplexing logic functions for computing signal processing tasks in synthetic biology. ''Biotechnology Journal'', 6(7):784-95. [http://onlinelibrary.wiley.com/doi/10.1002/biot.201100080/abstract Link]
#Pasotti L, Zucca S, Lupotto M, Cusella De Angelis MG, Magni P (2011) Characterization of a synthetic bacterial self-destruction device for programmed cell death and for recombinant proteins release. ''Journal of Biological Engineering'', 5:8. [http://www.jbioleng.org/content/5/1/8 Link]


==Useful links==
==Useful links==
*[[OpenWetWare:Welcome|Introductory tutorial]]
*[[OpenWetWare:Welcome|Introductory tutorial]]
*[[Help|OpenWetWare help pages]]
*[[Help|OpenWetWare help pages]]
*[http://partsregistry.org/ Registry of Standard Biological Parts]
*[http://web.expasy.org/translate/ ExPASy Translate Tool]
*[http://rna.tbi.univie.ac.at/cgi-bin/RNAfold.cgi RNAfold web server]
*[http://mfold.rna.albany.edu/ UNAFold web server]
*[http://cgsc.biology.yale.edu/ Coli Genetic Stock Center]
*[http://openwetware.org/wiki/E._coli_genotypes ''E. coli'' genotypes]

Revision as of 04:47, 7 September 2014

Contact Info

Lorenzo Pasotti
  • Lorenzo Pasotti
  • University of Pavia
  • via Ferrata 3, Pavia I-27100, Italy
  • lorenzo dot pasotti at unipv dot it

I work on synthetic biology in the Laboratory for Biomedical Informatics and in the molecular biology lab of the Centre for Tissue Engineering (see Magni lab on OWW), University of Pavia.

Education

  • 2012-, Postdoc researcher, University of Pavia
  • Feb-Sep 2011, visiting PhD student, School of Biological Sciences, University of Edinburgh, UK
  • 2008-2012, PhD, Bioengineering and Bioinformatics, University of Pavia
  • 2006-2008, MS, Biomedical Informatics, University of Pavia
  • 2003-2006, BS, Biomedical Engineering, University of Pavia

Research interests

  1. Modularity of biological parts
  2. Pathway engineering for biofuel production
  3. Bottom-up design and modelling of gene networks

Publications

  1. Pasotti L, Zucca S (2014) Advances and computational tools towards predictable design in biological engineering. Computational and Mathematical Methods in Medicine, Article ID: 369681.
  2. Politi N, Pasotti L, Zucca S, Casanova M, Micoli G, Cusella De Angelis MG, Magni P (2014) Half-life measurements of chemical inducers for recombinant gene expression. Journal of Biological Engineering, 8:5. Link
  3. Pasotti L, Zucca S, Magni P (2013) Modelling for synthetic biology. Book chapter in: Modeling Methodology for Physiology and Medicine: Second Edition (Elsevier), p.545-564. DOI: 10.1016/B978-0-12-411557-6.00023-9.
  4. Zucca S, Pasotti L, Politi N, Cusella De Angelis MG, Magni P (2013) A standard vector for the chromosomal integration and characterization of BioBrickTM parts in Escherichia coli. Journal of Biological Engineering, 7:12. Link
  5. Pasotti L, Politi N, Zucca S, Cusella De Angelis MG, Magni P (2012) Bottom-up engineering of biological systems through standard bricks: A modularity study on basic parts and devices. PLoS ONE, 7(7). Link
  6. Zucca S, Pasotti L, Mazzini G, Cusella De Angelis MG, Magni P (2012) Characterization of an inducible promoter in different DNA copy number conditions. BMC Bioinformatics, 13(Suppl 4): S11. Link
  7. Pasotti L, Quattrocelli M, Galli D, De Angelis MG, Magni P (2011) Multiplexing and demultiplexing logic functions for computing signal processing tasks in synthetic biology. Biotechnology Journal, 6(7):784-95. Link
  8. Pasotti L, Zucca S, Lupotto M, Cusella De Angelis MG, Magni P (2011) Characterization of a synthetic bacterial self-destruction device for programmed cell death and for recombinant proteins release. Journal of Biological Engineering, 5:8. Link

Useful links

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