User:Marco JL De Groot

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Contact Info

Marco JL de Groot (an artistic interpretation)

• Marco JL de Groot
• Delft University of Technology
• Mekelweg 4
• NL-2628CD Delft
• The Netherlands
• Email me through OpenWetWare

I work in the Department of Mediamatics, Information and Communication Theory Group section Bioinformatics at Delft Univesity of Technology. I learned about OpenWetWare from iGEM, and I've joined because of our iGEM participation.

Education

• Year, PhD, Institute
• Year, MS, Institute
• Year, BS, Institute

Research interests

1. Interest 1
2. Interest 2
3. Interest 3

Publications

1. vanKuyk PA, de Groot MJ, Ruijter GJ, de Vries RP, and Visser J. The Aspergillus niger D-xylulose kinase gene is co-expressed with genes encoding arabinan degrading enzymes, and is essential for growth on D-xylose and L-arabinose. Eur J Biochem. 2001 Oct;268(20):5414-23. DOI:10.1046/j.0014-2956.2001.02482.x |
2. de Groot MJL, van de Vondervoort PJI, de Vries RP, vanKuyk PA, Ruijter GJG, and Visser J. Isolation and characterization of two specific regulatory Aspergillus niger mutants shows antagonistic regulation of arabinan and xylan metabolism. Microbiology (Reading). 2003 May;149(Pt 5):1183-1191. DOI:10.1099/mic.0.25993-0 |
3. Prathumpai W, Gabelgaard JB, Wanchanthuek P, van de Vondervoort PJ, de Groot MJ, McIntyre M, and Nielsen J. Metabolic control analysis of xylose catabolism in Aspergillus. Biotechnol Prog. 2003 Jul-Aug;19(4):1136-41. DOI:10.1021/bp034020r |
4. de Groot MJ, Prathumpai W, Visser J, and Ruijter GJ. Metabolic control analysis of Aspergillus niger L-arabinose catabolism. Biotechnol Prog. 2005 Nov-Dec;21(6):1610-6. DOI:10.1021/bp050189o |
5. van de Vondervoort PJ, de Groot MJ, Ruijter GJ, and Visser J. Selection and characterisation of a xylitol-derepressed Aspergillus niger mutant that is apparently impaired in xylitol transport. Appl Microbiol Biotechnol. 2006 Dec;73(4):881-6. DOI:10.1007/s00253-006-0527-y |

6. de Groot MJL, van den Dool C, Wösten HAB, Levisson M, vanKuyk PA, Ruijter GJG, de Vries RP. Regulation of Pentose Catabolic Pathway Genes of Aspergillus niger Food Technol Biotechnol 2007; 42 134-138. http://www.ftb.com.hr/45-134.html

7. Daran-Lapujade P, Rossell S, van Gulik WM, Luttik MA, de Groot MJ, Slijper M, Heck AJ, Daran JM, de Winde JH, Westerhoff HV, Pronk JT, and Bakker BM. The fluxes through glycolytic enzymes in Saccharomyces cerevisiae are predominantly regulated at posttranscriptional levels. Proc Natl Acad Sci U S A. 2007 Oct 2;104(40):15753-8. DOI:10.1073/pnas.0707476104 |
8. de Groot MJL, Daran-Lapujade P, van Breukelen B, Knijnenburg TA, de Hulster EAF, Reinders MJT, Pronk JT, Heck AJR, and Slijper M. Quantitative proteomics and transcriptomics of anaerobic and aerobic yeast cultures reveals post-transcriptional regulation of key cellular processes. Microbiology (Reading). 2007 Nov;153(Pt 11):3864-3878. DOI:10.1099/mic.0.2007/009969-0 |

   leave a comment about a paper here

9. ISBN:9085042518

Useful links

• http://ict.ewi.tudelft.nl/index.php?option=com_contact&task=view&id=100
• http://openwetware.org/wiki/IGEM:TUDelft/2008
• Introductory tutorial
• OpenWetWare help pages