User:Meng Xiao He/Notebook/fall08/2008/12/10: Difference between revisions

From OpenWetWare
< User:Meng Xiao He‎ | Notebook‎ | fall08‎ | 2008‎ | 12
Jump to navigationJump to search
 
(9 intermediate revisions by the same user not shown)
Line 8: Line 8:
<!-- ##### DO NOT edit above this line unless you know what you are doing. ##### -->
<!-- ##### DO NOT edit above this line unless you know what you are doing. ##### -->
==PCR tests==
==PCR tests==
*use 12-8 protocol on cco brown colonies 1 and 2: each takes cco5F, cco3R, and just pair of 3 outers
*use 12-8 protocol on cco12.9B, C: each takes cco5F, cco3R, and just pair of 3 outers, 20ul
*use Platinum adaptation of 12-8 protocol:
*('''update: does not work''') use Platinum adaptation of 12-8 protocol: 25ul
:Cycling conditions:
:Cycling conditions:
#5 min at 94
#5 min at 94
Line 17: Line 17:
#10 min@ 72 to end
#10 min@ 72 to end
#hold at 4
#hold at 4
::61: cbb12.9A, B, C, cco12.9D; 57: cbb12.9D, E, cco12.9A


==Plating on sucrose==
==Plating==
*1:4 dilution into fresh LB, let grow, then plate
===on sucrose===
*40ul ferric citrate added to plates for B colonies
*1:2 dilution into fresh salt-free-LB, let grow 1hr, then plate 10ul
** cultures were very thin (may be because had to user rocker- shaker is nonfunctional)
** cco12.9A grew thick, though
 
===on Gm===
*remaining Gm culture of wash off from filter of Duo


<!-- end -->
<!-- end -->
|}
|}

Latest revision as of 10:17, 12 December 2008

<html><img src="/images/9/94/Report.png" border="0" /></html> Main project page<html>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</html> Constants
<html><img src="/images/c/c3/Resultset_previous.png" border="0" /></html>Previous entry<html>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</html>Next entry<html><img src="/images/5/5c/Resultset_next.png" border="0" /></html>

PCR tests

  • use 12-8 protocol on cco12.9B, C: each takes cco5F, cco3R, and just pair of 3 outers, 20ul
  • (update: does not work) use Platinum adaptation of 12-8 protocol: 25ul
Cycling conditions:
  1. 5 min at 94
  2. 30s at 94
  3. 30s @ 61, 57 for 40 cycles
  4. 7min @ 72 (should capture WT cells as well), only 2min for last 12 cycles
  5. 10 min@ 72 to end
  6. hold at 4
61: cbb12.9A, B, C, cco12.9D; 57: cbb12.9D, E, cco12.9A

Plating

on sucrose

  • 1:2 dilution into fresh salt-free-LB, let grow 1hr, then plate 10ul
    • cultures were very thin (may be because had to user rocker- shaker is nonfunctional)
    • cco12.9A grew thick, though

on Gm

  • remaining Gm culture of wash off from filter of Duo