User:Morgan G. I. Langille/Notebook/Unknown Genes/2010/09/30: Difference between revisions
From OpenWetWare
(Autocreate 2010/09/30 Entry for User:Morgan_G._I._Langille/Notebook/Unknown_Genes) |
|||
| Line 6: | Line 6: | ||
| colspan="2"| | | colspan="2"| | ||
<!-- ##### DO NOT edit above this line unless you know what you are doing. ##### --> | <!-- ##### DO NOT edit above this line unless you know what you are doing. ##### --> | ||
== | ==Alpha diversity== | ||
* | * Calculated alpha diversity for GOS (and other) samples using PFAM counts | ||
**This command generates the output files: ./[http://edhar.genomecenter.ucdavis.edu/~mlangill/projects/community_profiling/data/cluster/camera/alphadiversity/col_alphadiversity.R col_alphadiversity.R] camera_proteins_vs_pfam.txt alpha_diversity | |||
**The [http://edhar.genomecenter.ucdavis.edu/~mlangill/projects/community_profiling/data/cluster/camera/alphadiversity/ output files] are labeled "alpha_diversity_" followed by the name of the diversity measurement. | |||
**Each diversity metric is output in two files: | |||
***"by_sample" just lists the alpha measurements for each sample | |||
***"hist.pdf" is a pdf of the histogram of the measurements | |||
***Also, there is a "_plot.pdf" that shows a simple x,y plot of the two alpha measurements. | |||
Revision as of 16:26, 30 September 2010
 Unknown Genes
|
<html><img src="/images/9/94/Report.png" border="0" /></html> Main project page <html><img src="/images/c/c3/Resultset_previous.png" border="0" /></html>Previous entry<html> </html>Next entry<html><img src="/images/5/5c/Resultset_next.png" border="0" /></html> |
Alpha diversity
| |
