User:Nkuldell/SAGA vs Swi/Snf: Difference between revisions
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! TAF subunits, cerevisiae </i> | ! TAF subunits, cerevisiae </i> | ||
! size, chromosome, null p-type | ! size, chromosome, null p-type | ||
|- | |- | ||
| TAF5 (aka TAF90) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=TAF5]] | | TAF5 (aka TAF90) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=TAF5]] | ||
| 2.397 kb/798aa, Chr. II, <font color = red>inviable</font color> | | 2.397 kb/798aa, Chr. II, <font color = red>inviable</font color> | ||
|- | |- | ||
| TAF6 (aka TAF60) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=TAF6]] | | TAF6 (aka TAF60) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=TAF6]] | ||
| 1.551 kb/516aa, Chr. VII, <font color = red>inviable</font color> | | 1.551 kb/516aa, Chr. VII, <font color = red>inviable</font color> | ||
|- | |- | ||
| TAF9 (aka TAF17) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=TAF9]] | | TAF9 (aka TAF17) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=TAF9]] | ||
| 0.474 kb/157aa, Chr. XIII, <font color = red>inviable</font color> | | 0.474 kb/157aa, Chr. XIII, <font color = red>inviable</font color> | ||
|- | |- | ||
| TAF10 (aka TAF23, TAF25) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=TAF10]] | | TAF10 (aka TAF23, TAF25) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=TAF10]] | ||
| 0.621 kb/206aa, Chr. IV, <font color = red>inviable</font color> | | 0.621 kb/206aa, Chr. IV, <font color = red>inviable</font color> | ||
|- | |- | ||
| TAF12 (aka TAF61, TAF68) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=TAF12]] | | TAF12 (aka TAF61, TAF68) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=TAF12]] | ||
| 1.620 kb/539aa, Chr. IV, <font color = red>inviable</font color> | | 1.620 kb/539aa, Chr. IV, <font color = red>inviable</font color> | ||
|} | |} | ||
{| border="1" | {| border="1" | ||
! Tra1 subunit | ! Tra1 subunit | ||
! size, chromosome, null p-type | ! size, chromosome, null p-type | ||
|- | |- | ||
| Tra1 [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=TRA1]] | | Tra1 [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=TRA1]] | ||
| 11.235 kb/3744aa, Chr. VIII, <font color = red>inviable</font color> | | 11.235 kb/3744aa, Chr. VIII, <font color = red>inviable</font color> | ||
|} | |} | ||
{| border="1" | {| border="1" |
Revision as of 05:31, 31 October 2006
in progress...
SAGA subunits, S. cerevisiae
most strains listed in Martens, Wu, Winston G&D paper 2005 [[1]]
link to FW yeast strain collection [[2]]
Parent strain for 109 deletion analysis:
Ada subunits | size,chromosome,null p-type | deletion strain | genotype |
---|---|---|---|
Ada1 (aka HFI1, SUP110, SRM12, GAN1) [[3]] | 1.467 kb/489 aa, Chr. XVI, viable |
||
Ada2 (aka SWI8) [[4]] | 1.305 kb/434aa, Chr. IV, viable |
||
Ada3 (aka NGG1, SWI7) [[5]] | 2.109 kb/702aa, Chr. IV, viable |
||
Gcn5 (aka ADA4, SWI9) [[6]] | 1.32 kb/439aa, Chr. VII, viable |
||
Ada5 (aka SPT20) [[7]] | 1.815 kb/604aa, Chr. XV, viable |
Spt subunits | size, chromosome, null p-type | deletion strain | genotype |
---|---|---|---|
Spt3 [[8]] | 1.014 kb/337aa, Chr. IV, viable |
||
Spt7 (aka GIT2) [[9]] | 3.999 kb/1332aa, Chr. II, viable |
||
Spt8 [[10]] | 1.809 kb/602aa, Chr. XII, viable |
||
Spt20 (aka Ada5) [[11]] | same as Ada5 1.815 kb/604aa, Chr. XV, viable |
TAF subunits, cerevisiae | size, chromosome, null p-type |
---|---|
TAF5 (aka TAF90) [[12]] | 2.397 kb/798aa, Chr. II, inviable |
TAF6 (aka TAF60) [[13]] | 1.551 kb/516aa, Chr. VII, inviable |
TAF9 (aka TAF17) [[14]] | 0.474 kb/157aa, Chr. XIII, inviable |
TAF10 (aka TAF23, TAF25) [[15]] | 0.621 kb/206aa, Chr. IV, inviable |
TAF12 (aka TAF61, TAF68) [[16]] | 1.620 kb/539aa, Chr. IV, inviable |
Tra1 subunit | size, chromosome, null p-type |
---|---|
Tra1 [[17]] | 11.235 kb/3744aa, Chr. VIII, inviable |
other subunits | size, chromosome, null p-type | deletion strain | genotype |
---|---|---|---|
Sgf73 [[18]] | 1.974 kb/657aa, Chr. VII , viable | ||
Sgf29 [[19]] | 0.779 kb/259aa, Chr. III, viable | ||
Sgf11 [[20]] | 0.3 kb/99aa, Chr.XVI, viable | ||
Ubp8 [[21]] | 1.416 kb/471aa, Chr. XIII, viable | ||
Sus1 [[22]] | gene with intron, Chr. II, viable |
SWI/SNF subunits
SWI subunits | size,chromosome,null p-type |
---|---|
SWII (aka ADR6, GAM3, LPA1)[[23]] | 3945bp/1315 aa, Chr. XVI, inviable |
SWI2 (aka GAM1, HAF1, SNF2 , TYE3)[[24]] | 5112bp/1704aa, Chr. XV, viable |
SWI3 (aka TYE2) [[25]] | 2478bp/826aa, Chr. X, viable |
SNF subunits | size, chromosome, null p-type |
---|---|
SNF5 | |
SNF6 | |
SNF11 |
SWP subunits | size, chromosome, null p-type |
---|---|
SWP82 | |
SWP73 | |
SWP59 | |
SWP61 | |
SWP29 |