User:Nkuldell/SAGA vs Swi/Snf: Difference between revisions

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most strains listed in Martens, Wu, Winston G&D paper 2005 [[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=pubmed&cmd=Retrieve&dopt=AbstractPlus&list_uids=16291644&query_hl=10&itool=pubmed_docsum]]
most strains listed in Martens, Wu, Winston G&D paper 2005 [[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=pubmed&cmd=Retrieve&dopt=AbstractPlus&list_uids=16291644&query_hl=10&itool=pubmed_docsum]]
<br>link to FW yeast strain collection [[http://genepath.med.harvard.edu/strainfinder/yeast.php]] <br>
<br>link to FW yeast strain collection [[http://genepath.med.harvard.edu/strainfinder/yeast.php]] <br>
Parent strain for 109 deletion analysis:  
Parent strain for 109 deletion analysis: FY2068 = MAT(alpha) ura3-52 his3D200 leu2D1 lys2-128d
{| border="1"   
{| border="1"   
! Ada subunits   
! Ada subunits   
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|-     
|-     
| Ada1 (aka HFI1, SUP110, SRM12, GAN1) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=ADA1]]   
| Ada1 (aka HFI1, SUP110, SRM12, GAN1) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=ADA1]]   
| 1.467 kb/489 aa, <br> Chr. XVI, viable
| 1.467 kb/489 aa, Chr. XVI, <br>viable
|
| FY1560
|
| MAT(A) ura3-52, his3D200, lys2-173R2, <br> <b>ada1::HIS3</b>
|-     
|-     
| Ada2 (aka SWI8) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=ADA2]]   
| Ada2 (aka SWI8) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=ADA2]]   
| 1.305 kb/434aa, <br> Chr. IV, viable  
| 1.305 kb/434aa, Chr. IV, <br>viable  
|
| FY1548
|
| MAT(A) ura3-52, his3D200, leu2D1, lys2-128d, <br> <b> ada2::HIS3 </b>
|-     
|-     
| Ada3 (aka NGG1, SWI7) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=ADA3]]   
| Ada3 (aka NGG1, SWI7) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=ADA3]]   
| 2.109 kb/702aa, <br> Chr. IV, viable   
| 2.109 kb/702aa, Chr. IV, <br>viable   
|
| FY1596
|
| MAT(A) ura3-52, his3D200, his4-912d, lys2-173R2, <br> <b> ada3::HIS3 </b>
|-   
|-   
| Gcn5 (aka ADA4, SWI9) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=GCN5]]   
| Gcn5 (aka ADA4, SWI9) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=GCN5]]   
| 1.32 kb/439aa, <br> Chr. VII, viable
| 1.32 kb/439aa, Chr. VII, <br>viable
|
| FY1600
|
| MAT(A) ura3-52, leu2D1, his3D200, his4-917d, <br> <b> gcn5::HIS3 </b>
|-   
|-   
| Ada5 (aka SPT20) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=Ada5]]   
| Ada5 (aka SPT20) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=Ada5]]   
| 1.815 kb/604aa, <br> Chr. XV, viable
| 1.815 kb/604aa, Chr. XV, <br>viable
|
|
|
|

Revision as of 20:21, 31 October 2006

in progress...

SAGA subunits, S. cerevisiae

most strains listed in Martens, Wu, Winston G&D paper 2005 [[1]]
link to FW yeast strain collection [[2]]
Parent strain for 109 deletion analysis: FY2068 = MAT(alpha) ura3-52 his3D200 leu2D1 lys2-128d

Ada subunits size,chromosome,null p-type deletion strain genotype
Ada1 (aka HFI1, SUP110, SRM12, GAN1) [[3]] 1.467 kb/489 aa, Chr. XVI,
viable 		FY1560 MAT(A) ura3-52, his3D200, lys2-173R2,
ada1::HIS3
Ada2 (aka SWI8) [[4]] 1.305 kb/434aa, Chr. IV,
viable 		FY1548 MAT(A) ura3-52, his3D200, leu2D1, lys2-128d,
ada2::HIS3
Ada3 (aka NGG1, SWI7) [[5]] 2.109 kb/702aa, Chr. IV,
viable 		FY1596 MAT(A) ura3-52, his3D200, his4-912d, lys2-173R2,
ada3::HIS3
Gcn5 (aka ADA4, SWI9) [[6]] 1.32 kb/439aa, Chr. VII,
viable 		FY1600 MAT(A) ura3-52, leu2D1, his3D200, his4-917d,
gcn5::HIS3
Ada5 (aka SPT20) [[7]] 1.815 kb/604aa, Chr. XV,
viable
Spt subunits size, chromosome, null p-type deletion strain genotype
Spt3 [[8]] 1.014 kb/337aa,
Chr. IV, viable
Spt7 (aka GIT2) [[9]] 3.999 kb/1332aa,
Chr. II, viable
Spt8 [[10]] 1.809 kb/602aa,
Chr. XII, viable
Spt20 (aka Ada5) [[11]] same as Ada5
1.815 kb/604aa, Chr. XV, viable
TAF subunits, cerevisiae size, chromosome, null p-type
TAF5 (aka TAF90) [[12]] 2.397 kb/798aa, Chr. II, inviable
TAF6 (aka TAF60) [[13]] 1.551 kb/516aa, Chr. VII, inviable
TAF9 (aka TAF17) [[14]] 0.474 kb/157aa, Chr. XIII, inviable
TAF10 (aka TAF23, TAF25) [[15]] 0.621 kb/206aa, Chr. IV, inviable
TAF12 (aka TAF61, TAF68) [[16]] 1.620 kb/539aa, Chr. IV, inviable
Tra1 subunit size, chromosome, null p-type
Tra1 [[17]] 11.235 kb/3744aa, Chr. VIII, inviable
other subunits size, chromosome, null p-type deletion strain genotype
Sgf73 [[18]] 1.974 kb/657aa, Chr. VII , viable
Sgf29 [[19]] 0.779 kb/259aa, Chr. III, viable
Sgf11 [[20]] 0.3 kb/99aa, Chr.XVI, viable
Ubp8 [[21]] 1.416 kb/471aa, Chr. XIII, viable
Sus1 [[22]] gene with intron, Chr. II, viable

SWI/SNF subunits

SWI subunits size,chromosome,null p-type
SWII (aka ADR6, GAM3, LPA1)[[23]] 3945bp/1315 aa, Chr. XVI, inviable
SWI2 (aka GAM1, HAF1, SNF2 , TYE3)[[24]] 5112bp/1704aa, Chr. XV, viable
SWI3 (aka TYE2) [[25]] 2478bp/826aa, Chr. X, viable
SNF subunits size, chromosome, null p-type
SNF5
SNF6
SNF11
SWP subunits size, chromosome, null p-type
SWP82
SWP73
SWP59
SWP61
SWP29
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