User:Nkuldell/SAGA vs Swi/Snf: Difference between revisions

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Note: incomplete lists here....
in progress...
 


==SAGA subunits, <i> S. cerevisiae </i>==
==SAGA subunits, <i> S. cerevisiae </i>==
{| border="1"   
{| border="1"   
! Ada subunits   
! Ada subunits   
! gene size,chromosome,null p-type   
! size,chromosome,null p-type   
|-     
|-     
| Ada1 (aka HFI1, SUP110, SRM12, GAN1) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=ADA1]]   
| Ada1 (aka HFI1, SUP110, SRM12, GAN1) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=ADA1]]   
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|}
|}
{| border="1"   
{| border="1"   
! Spt subunits,
! Spt subunits  
! gene size, chromosome, null p-type   
! size, chromosome, null p-type   
|-
| Spt3 [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=spt3]] 
| 1.014 kb/337aa, <br> Chr. IV, viable
|-     
|-     
| Spt7 (aka GIT2) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=Spt7]]   
| Spt7 (aka GIT2) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=Spt7]]   
| 3.999 kb/1332aa, <br> Chr. II, viable   
| 3.999 kb/1332aa, <br> Chr. II, viable   
|-
| Spt8 [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=Spt8]] 
| 1.809 kb/602aa, <br> Chr. XII, viable
|-   
|-   
| Spt20 (aka Ada5) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=SPT20]]   
| Spt20 (aka Ada5) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=SPT20]]   
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{| border="1"  
{| border="1"  
! TAF subunits, cerevisiae </i>   
! TAF subunits, cerevisiae </i>   
! gene size, chromosome, null p-type   
! size, chromosome, null p-type   
|-   
|-   
| TAF5 (aka TAF90) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=TAF5]]   
| TAF5 (aka TAF90) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=TAF5]]   
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|-   
|-   
| TAF9 (aka TAF17) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=TAF9]]   
| TAF9 (aka TAF17) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=TAF9]]   
| 0.474 kb/157aa, Chr. XIII, <font color = red>inviable</font color>
| 0.474 kb/157aa, Chr. XIII, <font color = red>inviable</font color>  
|-
| TAF10 (aka TAF23, TAF25) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=TAF10]]
| 0.621 kb/206aa, Chr. IV, <font color = red>inviable</font color>
|-
|-
| TAF12 (aka TAF61, TAF68) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=TAF12]]
| TAF12 (aka TAF61, TAF68) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=TAF12]]
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{| border="1"  
{| border="1"  
! Tra1 subunit   
! Tra1 subunit   
! gene size, chromosome, null p-type   
! size, chromosome, null p-type   
|-   
|-   
| Tra1 [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=TRA1]]   
| Tra1 [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=TRA1]]   
| 11.235 kb/3744aa, Chr. VIII, <font color = red>inviable</font color>
| 11.235 kb/3744aa, Chr. VIII, <font color = red>inviable</font color>
|}
|}
{| border="1"
{| border="1"
! other subunits   
! other subunits   
! gene size, chromosome, null p-type  
! size, chromosome, null p-type  
|-   
|-   
| Sgf73 [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=sgf73]]   
| Sgf73 [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=sgf73]]   

Revision as of 06:17, 29 October 2006

in progress...

SAGA subunits, S. cerevisiae

Ada subunits size,chromosome,null p-type
Ada1 (aka HFI1, SUP110, SRM12, GAN1) [[1]] 1.467 kb/489 aa,
Chr. XVI, viable
Ada2 (aka SWI8) [[2]] 1.305 kb/434aa,
Chr. IV, viable
Ada3 (aka NGG1, SWI7) [[3]] 2.109 kb/702aa,
Chr. IV, viable
Gcn5 (aka ADA4, SWI9) [[4]] 1.32 kb/439aa,
Chr. VII, viable
Ada5 (aka SPT20) [[5]] 1.815 kb/604aa,
Chr. XV, viable
Spt subunits size, chromosome, null p-type
Spt3 [[6]] 1.014 kb/337aa,
Chr. IV, viable
Spt7 (aka GIT2) [[7]] 3.999 kb/1332aa,
Chr. II, viable
Spt8 [[8]] 1.809 kb/602aa,
Chr. XII, viable
Spt20 (aka Ada5) [[9]] same as Ada5
1.815 kb/604aa, Chr. XV, viable
TAF subunits, cerevisiae size, chromosome, null p-type
TAF5 (aka TAF90) [[10]] 2.397 kb/798aa, Chr. II, inviable
TAF6 (aka TAF60) [[11]] 1.551 kb/516aa, Chr. VII, inviable
TAF9 (aka TAF17) [[12]] 0.474 kb/157aa, Chr. XIII, inviable
TAF10 (aka TAF23, TAF25) [[13]] 0.621 kb/206aa, Chr. IV, inviable
TAF12 (aka TAF61, TAF68) [[14]] 1.620 kb/539aa, Chr. IV, inviable
Tra1 subunit size, chromosome, null p-type
Tra1 [[15]] 11.235 kb/3744aa, Chr. VIII, inviable
other subunits size, chromosome, null p-type
Sgf73 [[16]] 1.974 kb/657aa, Chr. VII , viable
Sgf29 [[17]] 0.779 kb/259aa, Chr. III, viable
Sgf11 [[18]] 0.3 kb/99aa, Chr.XVI, viable
Ubp8 [[19]] 1.416 kb/471aa, Chr. XIII, viable
Sus1 [[20]] gene with intron, Chr. II, viable

SWI/SNF subunits

SWI1, SWI2, SWI3, SNF5, SNF6, SNF11, SWP82, SWP73, SWP59, SWP61, and SWP29

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