User:Nkuldell/SAGA vs Swi/Snf: Difference between revisions

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==SAGA subunits, <i> S. cerevisiae </i>==
==SAGA subunits, <i> S. cerevisiae </i>==
link to FW yeast strain collection [[http://genepath.med.harvard.edu/strainfinder/yeast.php]] <br>
Parent strain for 109 deletion analysis:
{| border="1"   
{| border="1"   
! Ada subunits   
! Ada subunits   
! size,chromosome,null p-type   
! size,chromosome,null p-type
! deletion strain
! genotype  
|-     
|-     
| Ada1 (aka HFI1, SUP110, SRM12, GAN1) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=ADA1]]   
| Ada1 (aka HFI1, SUP110, SRM12, GAN1) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=ADA1]]   
| 1.467 kb/489 aa, <br> Chr. XVI, viable   
| 1.467 kb/489 aa, <br> Chr. XVI, viable
|
|  
|-     
|-     
| Ada2 (aka SWI8) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=ADA2]]   
| Ada2 (aka SWI8) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=ADA2]]   
| 1.305 kb/434aa, <br> Chr. IV, viable  
| 1.305 kb/434aa, <br> Chr. IV, viable  
|
| 
|-     
|-     
| Ada3 (aka NGG1, SWI7) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=ADA3]]   
| Ada3 (aka NGG1, SWI7) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=ADA3]]   
| 2.109 kb/702aa, <br> Chr. IV, viable   
| 2.109 kb/702aa, <br> Chr. IV, viable   
|
|
|-   
|-   
| Gcn5 (aka ADA4, SWI9) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=GCN5]]   
| Gcn5 (aka ADA4, SWI9) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=GCN5]]   
| 1.32 kb/439aa, <br> Chr. VII, viable   
| 1.32 kb/439aa, <br> Chr. VII, viable
|
|  
|-   
|-   
| Ada5 (aka SPT20) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=Ada5]]   
| Ada5 (aka SPT20) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=Ada5]]   
| 1.815 kb/604aa, <br> Chr. XV, viable
| 1.815 kb/604aa, <br> Chr. XV, viable
|
|
|}
|}
{| border="1"   
{| border="1"   
! Spt subunits  
! Spt subunits  
! size, chromosome, null p-type   
! size, chromosome, null p-type
! deletion strain
! genotype  
|-
|-
| Spt3 [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=spt3]]   
| Spt3 [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=spt3]]   
| 1.014 kb/337aa, <br> Chr. IV, viable
| 1.014 kb/337aa, <br> Chr. IV, viable
|
|
|-     
|-     
| Spt7 (aka GIT2) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=Spt7]]   
| Spt7 (aka GIT2) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=Spt7]]   
| 3.999 kb/1332aa, <br> Chr. II, viable
| 3.999 kb/1332aa, <br> Chr. II, viable  
|
|
|-
|-
| Spt8 [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=Spt8]]   
| Spt8 [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=Spt8]]   
| 1.809 kb/602aa, <br> Chr. XII, viable
| 1.809 kb/602aa, <br> Chr. XII, viable
|
|
|-   
|-   
| Spt20 (aka Ada5) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=SPT20]]   
| Spt20 (aka Ada5) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=SPT20]]   
| same as Ada5 <br> 1.815 kb/604aa, Chr. XV, viable   
| same as Ada5 <br> 1.815 kb/604aa, Chr. XV, viable
|
|  
|}
|}
{| border="1"  
{| border="1"  
! TAF subunits, cerevisiae </i>   
! TAF subunits, cerevisiae </i>   
! size, chromosome, null p-type
! size, chromosome, null p-type  
! deletion strain
! genotype
|-   
|-   
| TAF5 (aka TAF90) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=TAF5]]   
| TAF5 (aka TAF90) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=TAF5]]   
| 2.397 kb/798aa, Chr. II, <font color = red>inviable</font color>  
| 2.397 kb/798aa, Chr. II, <font color = red>inviable</font color>  
|
|
|-  
|-  
| TAF6 (aka TAF60) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=TAF6]]   
| TAF6 (aka TAF60) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=TAF6]]   
| 1.551 kb/516aa, Chr. VII, <font color = red>inviable</font color>   
| 1.551 kb/516aa, Chr. VII, <font color = red>inviable</font color>
|
|  
|-   
|-   
| TAF9 (aka TAF17) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=TAF9]]   
| TAF9 (aka TAF17) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=TAF9]]   
| 0.474 kb/157aa, Chr. XIII, <font color = red>inviable</font color>  
| 0.474 kb/157aa, Chr. XIII, <font color = red>inviable</font color>  
|
|
|-
|-
| TAF10 (aka TAF23, TAF25) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=TAF10]]
| TAF10 (aka TAF23, TAF25) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=TAF10]]
| 0.621 kb/206aa, Chr. IV, <font color = red>inviable</font color>  
| 0.621 kb/206aa, Chr. IV, <font color = red>inviable</font color>  
|
|
|-
|-
| TAF12 (aka TAF61, TAF68) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=TAF12]]
| TAF12 (aka TAF61, TAF68) [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=TAF12]]
| 1.620 kb/539aa, Chr. IV, <font color = red>inviable</font color>
| 1.620 kb/539aa, Chr. IV, <font color = red>inviable</font color>  
|
|
|}
|}
{| border="1"  
{| border="1"  
! Tra1 subunit   
! Tra1 subunit   
! size, chromosome, null p-type   
! size, chromosome, null p-type
! deletion strain
! genotype  
|-   
|-   
| Tra1 [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=TRA1]]   
| Tra1 [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=TRA1]]   
| 11.235 kb/3744aa, Chr. VIII, <font color = red>inviable</font color>
| 11.235 kb/3744aa, Chr. VIII, <font color = red>inviable</font color>
|
|
|}
|}
{| border="1"
{| border="1"
! other subunits   
! other subunits   
! size, chromosome, null p-type  
! size, chromosome, null p-type  
! deletion strain
! genotype
|-   
|-   
| Sgf73 [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=sgf73]]   
| Sgf73 [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=sgf73]]   
| 1.974 kb/657aa, Chr. VII , viable
| 1.974 kb/657aa, Chr. VII , viable  
|
|
|-
|-
| Sgf29 [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=sgf29]]   
| Sgf29 [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=sgf29]]   
| 0.779 kb/259aa, Chr. III, viable   
| 0.779 kb/259aa, Chr. III, viable
|
|  
|-
|-
| Sgf11 [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=sgf11]]   
| Sgf11 [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=sgf11]]   
| 0.3 kb/99aa, Chr.XVI, viable   
| 0.3 kb/99aa, Chr.XVI, viable
|
|  
|-
|-
| Ubp8 [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=ubp8]]   
| Ubp8 [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=ubp8]]   
| 1.416 kb/471aa, Chr. XIII, viable
| 1.416 kb/471aa, Chr. XIII, viable  
|
|
|-   
|-   
| Sus1 [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=Sus1]]   
| Sus1 [[http://db.yeastgenome.org/cgi-bin/locus.pl?locus=Sus1]]   
| gene with intron, Chr. II, viable   
| gene with intron, Chr. II, viable   
|
|
|}
|}
==SWI/SNF subunits==
==SWI/SNF subunits==

Revision as of 05:16, 31 October 2006

in progress...

SAGA subunits, S. cerevisiae

link to FW yeast strain collection [[1]]
Parent strain for 109 deletion analysis:

Ada subunits size,chromosome,null p-type deletion strain genotype
Ada1 (aka HFI1, SUP110, SRM12, GAN1) [[2]] 1.467 kb/489 aa,
Chr. XVI, viable
Ada2 (aka SWI8) [[3]] 1.305 kb/434aa,
Chr. IV, viable
Ada3 (aka NGG1, SWI7) [[4]] 2.109 kb/702aa,
Chr. IV, viable
Gcn5 (aka ADA4, SWI9) [[5]] 1.32 kb/439aa,
Chr. VII, viable
Ada5 (aka SPT20) [[6]] 1.815 kb/604aa,
Chr. XV, viable
Spt subunits size, chromosome, null p-type deletion strain genotype
Spt3 [[7]] 1.014 kb/337aa,
Chr. IV, viable
Spt7 (aka GIT2) [[8]] 3.999 kb/1332aa,
Chr. II, viable
Spt8 [[9]] 1.809 kb/602aa,
Chr. XII, viable
Spt20 (aka Ada5) [[10]] same as Ada5
1.815 kb/604aa, Chr. XV, viable
TAF subunits, cerevisiae size, chromosome, null p-type deletion strain genotype
TAF5 (aka TAF90) [[11]] 2.397 kb/798aa, Chr. II, inviable
TAF6 (aka TAF60) [[12]] 1.551 kb/516aa, Chr. VII, inviable
TAF9 (aka TAF17) [[13]] 0.474 kb/157aa, Chr. XIII, inviable
TAF10 (aka TAF23, TAF25) [[14]] 0.621 kb/206aa, Chr. IV, inviable
TAF12 (aka TAF61, TAF68) [[15]] 1.620 kb/539aa, Chr. IV, inviable
Tra1 subunit size, chromosome, null p-type deletion strain genotype
Tra1 [[16]] 11.235 kb/3744aa, Chr. VIII, inviable
other subunits size, chromosome, null p-type deletion strain genotype
Sgf73 [[17]] 1.974 kb/657aa, Chr. VII , viable
Sgf29 [[18]] 0.779 kb/259aa, Chr. III, viable
Sgf11 [[19]] 0.3 kb/99aa, Chr.XVI, viable
Ubp8 [[20]] 1.416 kb/471aa, Chr. XIII, viable
Sus1 [[21]] gene with intron, Chr. II, viable

SWI/SNF subunits

SWI subunits size,chromosome,null p-type
SWII (aka ADR6, GAM3, LPA1)[[22]] 3945bp/1315 aa, Chr. XVI, inviable
SWI2 (aka GAM1, HAF1, SNF2 , TYE3)[[23]] 5112bp/1704aa, Chr. XV, viable
SWI3 (aka TYE2) [[24]] 2478bp/826aa, Chr. X, viable
SNF subunits size, chromosome, null p-type
SNF5
SNF6
SNF11
SWP subunits size, chromosome, null p-type
SWP82
SWP73
SWP59
SWP61
SWP29
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