User:Nkuldell/SAGA vs Swi/Snf: Difference between revisions
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==SAGA subunits, <i> S. cerevisiae </i>== | ==SAGA subunits, <i> S. cerevisiae </i>== | ||
link to FW yeast strain collection [[http://genepath.med.harvard.edu/strainfinder/yeast.php]] <br> | most strains listed in Martens, Wu, Winston G&D paper 2005 [[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=pubmed&cmd=Retrieve&dopt=AbstractPlus&list_uids=16291644&query_hl=10&itool=pubmed_docsum]] | ||
<br>link to FW yeast strain collection [[http://genepath.med.harvard.edu/strainfinder/yeast.php]] <br> | |||
Parent strain for 109 deletion analysis: | Parent strain for 109 deletion analysis: | ||
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Revision as of 05:29, 31 October 2006
in progress...
SAGA subunits, S. cerevisiae
most strains listed in Martens, Wu, Winston G&D paper 2005 [[1]]
link to FW yeast strain collection [[2]]
Parent strain for 109 deletion analysis:
| Ada subunits | size,chromosome,null p-type | deletion strain | genotype |
|---|---|---|---|
| Ada1 (aka HFI1, SUP110, SRM12, GAN1) [[3]] | 1.467 kb/489 aa, Chr. XVI, viable |
||
| Ada2 (aka SWI8) [[4]] | 1.305 kb/434aa, Chr. IV, viable |
||
| Ada3 (aka NGG1, SWI7) [[5]] | 2.109 kb/702aa, Chr. IV, viable |
||
| Gcn5 (aka ADA4, SWI9) [[6]] | 1.32 kb/439aa, Chr. VII, viable |
||
| Ada5 (aka SPT20) [[7]] | 1.815 kb/604aa, Chr. XV, viable |
| Spt subunits | size, chromosome, null p-type | deletion strain | genotype |
|---|---|---|---|
| Spt3 [[8]] | 1.014 kb/337aa, Chr. IV, viable |
||
| Spt7 (aka GIT2) [[9]] | 3.999 kb/1332aa, Chr. II, viable |
||
| Spt8 [[10]] | 1.809 kb/602aa, Chr. XII, viable |
||
| Spt20 (aka Ada5) [[11]] | same as Ada5 1.815 kb/604aa, Chr. XV, viable |
| TAF subunits, cerevisiae | size, chromosome, null p-type | deletion strain | genotype |
|---|---|---|---|
| TAF5 (aka TAF90) [[12]] | 2.397 kb/798aa, Chr. II, inviable | ||
| TAF6 (aka TAF60) [[13]] | 1.551 kb/516aa, Chr. VII, inviable | ||
| TAF9 (aka TAF17) [[14]] | 0.474 kb/157aa, Chr. XIII, inviable | ||
| TAF10 (aka TAF23, TAF25) [[15]] | 0.621 kb/206aa, Chr. IV, inviable | ||
| TAF12 (aka TAF61, TAF68) [[16]] | 1.620 kb/539aa, Chr. IV, inviable |
| Tra1 subunit | size, chromosome, null p-type | deletion strain | genotype |
|---|---|---|---|
| Tra1 [[17]] | 11.235 kb/3744aa, Chr. VIII, inviable |
| other subunits | size, chromosome, null p-type | deletion strain | genotype |
|---|---|---|---|
| Sgf73 [[18]] | 1.974 kb/657aa, Chr. VII , viable | ||
| Sgf29 [[19]] | 0.779 kb/259aa, Chr. III, viable | ||
| Sgf11 [[20]] | 0.3 kb/99aa, Chr.XVI, viable | ||
| Ubp8 [[21]] | 1.416 kb/471aa, Chr. XIII, viable | ||
| Sus1 [[22]] | gene with intron, Chr. II, viable |
SWI/SNF subunits
| SWI subunits | size,chromosome,null p-type |
|---|---|
| SWII (aka ADR6, GAM3, LPA1)[[23]] | 3945bp/1315 aa, Chr. XVI, inviable |
| SWI2 (aka GAM1, HAF1, SNF2 , TYE3)[[24]] | 5112bp/1704aa, Chr. XV, viable |
| SWI3 (aka TYE2) [[25]] | 2478bp/826aa, Chr. X, viable |
| SNF subunits | size, chromosome, null p-type |
|---|---|
| SNF5 | |
| SNF6 | |
| SNF11 |
| SWP subunits | size, chromosome, null p-type |
|---|---|
| SWP82 | |
| SWP73 | |
| SWP59 | |
| SWP61 | |
| SWP29 |
