User:Nkuldell/SAGA vs Swi/Snf

in progress...

SAGA subunits, S. cerevisiae

most strains listed in Martens, Wu, Winston G&D paper 2005 [[1]]
link to FW yeast strain collection [[2]]
Parent strain for 109 deletion analysis: FY2068 = MAT(alpha) ura3-52 his3D200 leu2D1 lys2-128d

Ada subunits	size,chromosome,null p-type	deletion strain	genotype
Ada1 (aka HFI1, SUP110, SRM12, GAN1) [[3]]	1.467 kb/489 aa, Chr. XVI, viable	FY1560 aka NY383	MAT(A) ura3-52 his3D200 lys2-173R2 ada1::HIS3
Ada2 (aka SWI8) [[4]]	1.305 kb/434aa, Chr. IV, viable	FY1548 aka NY384	MAT(A) ura3-52 his3D200 leu2D1 lys2-128d ada2::HIS3
Ada3 (aka NGG1, SWI7) [[5]]	2.109 kb/702aa, Chr. IV, viable	FY1596 aka NY385	MAT(A) ura3-52 his3D200 his4-912d lys2-173R2 ada3::HIS3
Gcn5 (aka ADA4, SWI9) [[6]]	1.32 kb/439aa, Chr. VII, viable	FY1600 aka NY386	MAT(A) ura3-52 leu2D1 his3D200 his4-917d gcn5::HIS3
Ada5 (aka SPT20) [[7]]	1.815 kb/604aa, Chr. XV, viable	FY1098	see spt20::URA3

Spt subunits	size, chromosome, null p-type	deletion strain	genotype
Spt3 [[8]]	1.014 kb/337aa, Chr. IV, viable	FY2142 aka NY387	MAT (alpha) spt3::KanMX
Spt7 (aka GIT2) [[9]]	3.999 kb/1332aa, Chr. II, viable	FY963 aka NY388	MAT(A) ura3-52 his4-917d leu2d1 spt7::LEU2
Spt8 [[10]]	1.809 kb/602aa, Chr. XII, viable	FY50 aka NY389	MAT(A) ura3-52 his4-917d leu2d1 trp1d63 spt8d-302::LEU2
Spt20 (aka Ada5) [[11]]	1.815 kb/604aa, Chr. XV, viable	FY1098 aka NY390	MAT(A) ura3-52 his3d200 leu2d1 spt20d100::URA3

TAF subunits	size, chromosome, null p-type
TAF5 (aka TAF90) [[12]]	2.397 kb/798aa, Chr. II, inviable
TAF6 (aka TAF60) [[13]]	1.551 kb/516aa, Chr. VII, inviable
TAF9 (aka TAF17) [[14]]	0.474 kb/157aa, Chr. XIII, inviable
TAF10 (aka TAF23, TAF25) [[15]]	0.621 kb/206aa, Chr. IV, inviable
TAF12 (aka TAF61, TAF68) [[16]]	1.620 kb/539aa, Chr. IV, inviable

Tra1 subunit	size, chromosome, null p-type
Tra1 [[17]]	11.235 kb/3744aa, Chr. VIII, inviable

other subunits	size, chromosome, null p-type	deletion strain	genotype
Sgf73 [[18]]	1.974 kb/657aa, Chr. VII , viable	NY350	MAT(A) ura3D0 his3D200 leu2D0 lys2-128d HAP1 DAN3:HIS3 sgf73::URA3
Sgf29 [[19]]	0.779 kb/259aa, Chr. III, viable	FY2474	MAT(A) ura3-52 his4-917d leu2D1 lys2-173R2 arg4-12 sgf29D0::KanMX
Sgf11 [[20]]	0.3 kb/99aa, Chr.XVI, viable	NY391	MAT(A) ura3-52 his3D200 leu2D0 lys2-128d trp1-63 sgf11::KanMX
Ubp8 [[21]]	1.416 kb/471aa, Chr. XIII, viable	FY2473 aka NY392	MAT(alpha) ura3-52 leu2D1 lys2-173R2 arg4-12 ubp8D0::KanMX
Sus1 [[22]]	gene with intron, Chr. II, viable

SWI/SNF subunits

SWI subunits	size,chromosome,null p-type
SWII (aka ADR6, GAM3, LPA1)[[23]]	3945bp/1315 aa, Chr. XVI, inviable
SWI2 (aka GAM1, HAF1, SNF2 , TYE3)[[24]]	5112bp/1704aa, Chr. XV, viable
SWI3 (aka TYE2) [[25]]	2478bp/826aa, Chr. X, viable

SNF subunits	size, chromosome, null p-type
SNF5 (aka HAF4, SWI10, TYE4)[[26]]	2718 bp/906aa, Chr. II viable
SNF6 [[27]]	999bp/333aa, Chr. VIII, viable
SNF11 [[28]]	510 bp/170aa, Chr. IV viable

SWP subunits	size, chromosome, null p-type
SWP82
SWP73
SWP59
SWP61
SWP29