- Schmidt D., Schwalie P.C., Wilson M.D., Ballester B., Goncalves A., Kutter C., Brown G.D, Marshall A., Flicek P., and Odom D.T. (2012). Waves of retrotransposon expansion remodel genome organization and CTCF binding in multiple mammalian lineages. Cell, doi:10.1016/j.cell.2011.11.058 ahead of print.
- Laudadio I., Manfroid I., Achouri Y., Schmidt D., Wilson M.D., Cordi S., Thorrez L., Knoops L., Jacquemin P., Schuit F., Pierreux C.E., Odom D.T., Peers B., Lemaigre F.P.A. Feedback Loop Between The Liver-Enriched Transcription Factor Network and Mir-122 Controls Hepatocyte Differentiation. Gastroenterology. 2012 142, 119-29.
- Warnatz H.J., Schmidt D., Manke T., Piccini I., Sultan M., Borodina T., Balzereit D., Wruck W., Soldatov A., Vingron M., Lehrach H., Yaspo M.L. (2011). The BTB and CNC homology 1 (BACH1) target genes are involved in the oxidative stress response and in the control of the cell cycle. J Biol Chem. May 9 [ahead of print]
- Ip, J.Y., Schmidt D., Pan, Q., Ramani, A.K., Fraser, A.G., Odom, D.T., and Blencowe, B. (2011). Global impact of RNA polymerase II elongation inhibition on alternative splicing regulation. Genome Research 21, 390-401.
- Hurtado, A., Holmes, K.A., Ross-Innes, C.S., Schmidt D., and Carroll, J.S. (2011). FOXA1 is a key determinant of estrogen receptor function and endocrine response. Nature Genetics 43, 27-33.
- Schmidt D., Wilson, M.D., Ballester, B., Schwalie, P.C., Brown, G.D., Marshall, A., Kutter, C., Watt, S., Martinez-Jimenez, C.P., Mackay, S., et al. (2010b). Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding. Science 328, 1036-1040.
- Schmidt D., Schwalie, P.C., Ross-Innes, C.S., Hurtado, A., Brown, G.D., Carroll, J.S., Flicek, P., and Odom, D.T. (2010a). A CTCF-independent role for cohesin in tissue-specific transcription. Genome Research 20, 578-588.
- Ross-Innes, C.S., Stark, R., Holmes, K.A., Schmidt D., Spyrou, C., Russell, R., Massie, C.E., Vowler, S.L., Eldridge, M., and Carroll, J.S. (2010). Cooperative interaction between retinoic acid receptor-alpha and estrogen receptor in breast cancer. Genes & Development 24, 171-182.
- Schmidt D., Wilson, M.D., Spyrou, C., Brown, G.D., Hadfield, J., and Odom, D.T. (2009). ChIP-seq: using high-throughput sequencing to discover protein-DNA interactions. Methods 48, 240-248.
- Wilson, M.D., Barbosa-Morais, N.L., Schmidt D., Conboy, C.M., Vanes, L., Tybulewicz, V.L.J., Fisher, E.M.C., Tavaré, S., and Odom, D.T. (2008). Species-specific transcription in mice carrying human chromosome 21. Science 322, 434-438.
- Schmidt D., Stark, R., Wilson, M.D., Brown, G.D., and Odom, D.T. (2008). Genome-scale validation of deep-sequencing libraries. PLoS ONE 3, e3713.
- Sultan, M., Schulz, M.H., Richard, H., Magen, A., Klingenhoff, A., Scherf, M., Seifert, M., Borodina, T., Soldatov, A., Parkhomchuk, D., Schmidt D. et al. (2008). A global view of gene activity and alternative splicing by deep sequencing of the human transcriptome. Science 321, 956-960.
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