User:Pakpoom Subsoontorn/Notebook/Genetically Encoded Memory

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(TO DO List)
(TO DO List)
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* Next meeting: mention storyboard on interesting paper
* Next meeting: mention storyboard on interesting paper
* Next meeting: mention DNA-pol in vitro selection and in vivo mutagenesis
* Next meeting: mention DNA-pol in vitro selection and in vivo mutagenesis
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* Write up the detail structure and mechanism of integrase
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* read the poster detail from synbio 4.0, esp memory
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* Take a look at how virus hijack a host and take control of host machinery (i.e. look at Covert's large
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* Write up the detail structure and mechanism of integrase  
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scale viral-bacterial models). May be the first step for engineering a cell it to modify the virus to control the cell the way we want. 
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* discuss HT-in vivo protein evolution project with Jennifer, James, Quake's pp
* discuss HT-in vivo protein evolution project with Jennifer, James, Quake's pp
* Maybe I should start focusing on specific memory encoding problem..like counting the number of cell cycle.
* Maybe I should start focusing on specific memory encoding problem..like counting the number of cell cycle.

Revision as of 03:30, 20 October 2008

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Project Description/Abstract

Notes

Outline

  1. Application
  2. Grand Challenges
  3. Start-up experiments
  4. Review Articles

Project List

Conceptual questions

  • In the abstract level, how could we live with imperfect efficiency? No matter writing mechanism we choose in the end, the fraction of cells whose genome is actually rewritten will likely to be significantly less than a hundred percent.
  • What are the common/ different challenges between writing memory to DNA versus gene therapy/ transgenic?
  • Why reaction line DNA integration is irreversible but mostother don't?

TO DO List

  • reading
  • Next meeting: mention storyboard on interesting paper
  • Next meeting: mention DNA-pol in vitro selection and in vivo mutagenesis
  • read the poster detail from synbio 4.0, esp memory
  • Write up the detail structure and mechanism of integrase
  • discuss HT-in vivo protein evolution project with Jennifer, James, Quake's pp
  • Maybe I should start focusing on specific memory encoding problem..like counting the number of cell cycle.

..many signaling protein rise and fall in each cell cycle, so as the copy number of genome..we might be able to make use of them.

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