User:Pakpoom Subsoontorn/Notebook/general reading/2008/11/10: Difference between revisions

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==Activity note: 11/13/08==
==Activity note: 11/13/08==
*Revelation: Optimizing, organizing and automating. Speed up the construction process and evaluation process which will allow us to compare many different machines all at once. This is analogous to directed evolution vs de novo protein design...but at the system level. This will includes text mining, HT-experiment, and HT analysis.
*Revelation: Optimizing, organizing and automating. Speed up the construction process and evaluation process which will allow us to compare many different machines all at once. This is analogous to directed evolution vs de novo protein design...but at the system level. This will includes text mining, HT-experiment, and HT analysis.
*Start Organizing info by labs...found new resource for PhC31: Margaret Smith lab, U of Aberdeen. Read their 1998 for in E.coli/invitro assay for PhiC31..Skim through 2008 mutational studies on functional domain
*Plan to confine the first round paper reading to 2006-
==Activity note: 11/12/08==
==Activity note: 11/12/08==
*read KC's paper on E.coli cell wall and supplement in detail, listed all questions for meetings
*read KC's paper on E.coli cell wall and supplement in detail, listed all questions for meetings

Revision as of 02:53, 14 November 2008

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Activity note: 11/13/08

  • Revelation: Optimizing, organizing and automating. Speed up the construction process and evaluation process which will allow us to compare many different machines all at once. This is analogous to directed evolution vs de novo protein design...but at the system level. This will includes text mining, HT-experiment, and HT analysis.
  • Start Organizing info by labs...found new resource for PhC31: Margaret Smith lab, U of Aberdeen. Read their 1998 for in E.coli/invitro assay for PhiC31..Skim through 2008 mutational studies on functional domain
  • Plan to confine the first round paper reading to 2006-

Activity note: 11/12/08

  • read KC's paper on E.coli cell wall and supplement in detail, listed all questions for meetings
  • meeting KC, outline plan for cell shape dynamics at different growth phase and cracking experiment and modeling membrane/cell-wall relation
  • might need to edit the latest chip soon
  • review thermo up to Boltzmann factor

Activity note: 11/11/08

  • re-read MP Calos paper 2006 on PhiC31, marked important references, facts
  • Import recombinases studies PhiC31, Cre, R4, TP901-1 from MPC's main research page to papers..Tn3chimeric to Papers
  • I think we need to captures fundamental characterizing assay and then think about large scale thinggy

Activity note: 11/10/08

  • read review paper on bacterial cell wall synthesis, start making gene list/annotation, start bionumber for cell wall

Activity note: 11/09/08

  • Wrote weekly summary note on Genetically Encoding Memory and Bacterial cell-shape determination (see summary note page)
  • Primary organized literature for site-specific recombinartion in Paper...need to know how to remove/cross out



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