User:Pedrobeltrao/Notebook/Structural analysis of phosphorylation sites/Code: Difference between revisions

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# Install a [http://subversion.tigris.org/| subversion (svn)] client  
# Install a [http://subversion.tigris.org/| subversion (svn)] client  
# Then check out the latest version of the code:
# Then check out the latest version of the code:
   <code>svn checkout http://phospho3d.googlecode.com/svn/trunk/ phospho3d-read-only
   <code>svn checkout http://phospho3d.googlecode.com/svn/trunk/ phospho3d-read-only</code>
  </code>
  Project members should check out a write-access copy. You will find your personal checkout
<sub>
  command on the GoogleCode page after signing in:  
This will create a folder phospho3d-read-only in your current directory.
  http://code.google.com/p/phospho3d/source/checkout
 
Project members should check out a write-access copy. You will find your personal checkout
command on the GoogleCode page after signing in:  
http://code.google.com/p/phospho3d/source/checkout
</sub>
</sub>
# Before running python scripts, you also need to [http://biskit.pasteur.fr/install/short/|install the Biskit library]
# Before running python scripts, you also need to [http://biskit.pasteur.fr/install/short/|install the Biskit library]

Revision as of 08:58, 26 September 2009

Structural analysis of phosphorylation sites

Code

We are going to use Perl (Pedro) and Python (Raik). The Python code builds on the Biskit library. Our scripts are available through Google Code:

Access

  1. Install a subversion (svn) client
  2. Then check out the latest version of the code:
 svn checkout http://phospho3d.googlecode.com/svn/trunk/ phospho3d-read-only
 Project members should check out a write-access copy. You will find your personal checkout
 command on the GoogleCode page after signing in: 
 http://code.google.com/p/phospho3d/source/checkout

  1. Before running python scripts, you also need to the Biskit library


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