Revision as of 09:06, 26 September 2009

Structural analysis of phosphorylation sites

Code

We are going to use Perl (Pedro) and Python (Raik). The Python code builds on the Biskit library. Our scripts are available through Google Code:

1. Install a subversion (svn) client

2. Then check out the latest version of the code:

  svn checkout http://phospho3d.googlecode.com/svn/trunk/ phospho3d-read-only

This will create a folder phoshpho3d-read-only in your current directory -- see below for write access.
Project members should check out a write-access copy. You will find your personal checkout

3. Before running python scripts, you also need to the Biskit library

apart from the core library, the following helper applications will be useful:
- surfaceracer
- pymol

@@ Line 19: / Line 19: @@
 * This will create a folder phoshpho3d-read-only in your current directory -- see below for write access.
 * Project members should check out a write-access copy. You will find your personal checkout
-  command on the GoogleCode page after signing in:
+command on the GoogleCode page after signing in:
-  http://code.google.com/p/phospho3d/source/checkout
+http://code.google.com/p/phospho3d/source/checkout
 . Before running python scripts, you also need to [http://biskit.pasteur.fr/install/short/|install the Biskit library]