User:Pedrobeltrao/Notebook/Structural analysis of phosphorylation sites/Code: Difference between revisions
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2. Then check out the latest version of the code: | 2. Then check out the latest version of the code: | ||
<code>svn checkout http://phospho3d.googlecode.com/svn/trunk/ phospho3d | <code>svn checkout http://phospho3d.googlecode.com/svn/trunk/ phospho3d</code> | ||
* This will create a folder phoshpho3d | * This will create a folder "phoshpho3d" in your current directory | ||
* Project members | * Project members can check out a write-access copy. See: http://code.google.com/p/phospho3d/source/checkout | ||
3. Before running python scripts, you also need to [http://biskit.pasteur.fr/install/short/ install the Biskit library] | 3. Before running python scripts, you also need to [http://biskit.pasteur.fr/install/short/ install the Biskit library] | ||
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** [http://biskit.pasteur.fr/install/applications/surfrace surfaceracer] | ** [http://biskit.pasteur.fr/install/applications/surfrace surfaceracer] | ||
** pymol | ** pymol | ||
==SVN usage== | ==SVN usage== |
Revision as of 11:05, 26 September 2009
Structural analysis of phosphorylation sites | |
CodeWe are going to use Perl (Pedro) and Python (Raik). The Python code builds on the Biskit library. Our scripts are available through Google Code: Access1. Install a subversion (svn) client 2. Then check out the latest version of the code:
3. Before running python scripts, you also need to install the Biskit library
SVN usageAfter the initial checkout, the basic principle is always:
Example:
By default, svn commands operate on the local folder and all sub-folders. You can limit them to certain files:
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