User:Pedrobeltrao/Notebook/Structural analysis of phosphorylation sites/Code

Structural analysis of phosphorylation sites

Code We are going to use Perl (Pedro) and Python (Raik). The Python code builds on the Biskit library. Our scripts are available through Google Code: http://code.google.com/p/phospho3d/ Access 1. Install a subversion (svn) client 2. Then check out the latest version of the code: svn checkout http://phospho3d.googlecode.com/svn/trunk/ phospho3d-read-only This will create a folder phoshpho3d-read-only in your current directory Project members should check out a write-access copy. You will find your personal checkout command on the GoogleCode page after signing in: http://code.google.com/p/phospho3d/source/checkout 3. Before running python scripts, you also need to the Biskit library apart from the core library, the following helper applications will be useful: surfaceracer pymol