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| ==My projects== | | ==My projects== |
| This is a list of the projects in my notebook
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| ==Systems Biology Boot Camp 2009==
| | *[[Summer course Systems Biology (August 2009)]] |
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| '''Modeling mRNA transcription'''
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| Multiply terms on the back arrow to write an ODE
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| If there is not a mathematical software available then it is possible to obtain data points but this technique is limited by the step size:
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| - if the step size is too small the computer might round it up to zero.
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| - if the step size is too big we lose resolution.
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| <math>
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| \frac{dmRNA}{dt}=+\alpha - \beta \cdot mRNA
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| </math>
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| To add more equations in the system Matlab only takes column arrays
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| '''Equation with mRNA and protein'''
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| <math>
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| \frac{dmRNA}{dt}=+\alpha_m - \beta_m \cdot mRNA
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| </math>
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| <math>
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| \frac{dProtein}{dt}=+\alpha_p \cdot mRNA - \beta_p \cdot Protein
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| </math>
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| '''Parameter fitting'''
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| Least squares
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| Residuals
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| In Matlab there are tools to fit parameters like fmin search or cftool (courved fit tool)
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| | *[[Rotation at the Megason Lab (starting September 2009)]] |
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| | *[[Test layout]] |
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| {{Lnblinks}} | | {{Lnblinks}} |
