User:Ricardo Vidal/Automated bioinformatic discovery: Difference between revisions

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==Abstract==
==Abstract==
'''Work in progress - jotting down ideas to expand on'''
'''Work in progress - jotting down ideas to expand on'''
* Bioinformatics tools exist as tools to retrieve biological information from available databases and process that information directly based on the initial query. (Pull tools - TK)
 
* An approach that should be useful would be to have the tool work for the user by analyzing the query and retrieve information directly and indirectly related to the initial user input. Therefore, the tool would be providing information that may become useful to the user which was initially unaware of.
The goal of bioinformatics is to better understand the living cell and how it functions at the molecular level. By analyzing raw molecular sequence and structural data, bioinformatics research can generate new insights and provide a "global" perspective of the cell.
* Annotation on wiki (Think how this could be merged into this).
 
* Think about which biological data to focus on (DNA, Proteins, etc).
Currently there exist a large number of bioinformatics tools that allow researchers to analyze specific features of their biological data. If you are analyzing a DNA sequence, you can retreive information regarding the GC content, repeats in your sequence, open reading frames, among many other features. The same happens when analyzing amino acid sequences, with a large number of tools available to retrieve different protein specific information.
** François mentioned his interest in proteins, namely fluorescence proteins.
 
By combining a group of tools focused on specific features, it would be of great interest and utility to researchers to have the ability of querying a system that would not only retrieve the data directly related to the sequence but also suggested information of interest brought forward by the automated tool.


==Calendar/Schedule==
==Calendar/Schedule==

Revision as of 22:32, 20 April 2008

Topic/Title

  • Automated bioinformatic discovery: tools that tell you what you should know

Abstract

Work in progress - jotting down ideas to expand on

The goal of bioinformatics is to better understand the living cell and how it functions at the molecular level. By analyzing raw molecular sequence and structural data, bioinformatics research can generate new insights and provide a "global" perspective of the cell.

Currently there exist a large number of bioinformatics tools that allow researchers to analyze specific features of their biological data. If you are analyzing a DNA sequence, you can retreive information regarding the GC content, repeats in your sequence, open reading frames, among many other features. The same happens when analyzing amino acid sequences, with a large number of tools available to retrieve different protein specific information.

By combining a group of tools focused on specific features, it would be of great interest and utility to researchers to have the ability of querying a system that would not only retrieve the data directly related to the sequence but also suggested information of interest brought forward by the automated tool.

Calendar/Schedule

Mar Apr May Jun Jul Aug
Research & Development
Development & Testing
Testing & Analysis