User:Ricardo Z.N. Vencio
Introduction | Introdução I have been working on the development of mathematical/computational methods for the solution of problems in Biology and Medicine. In 2008 I joined the University of São Paulo's Medical School at Ribeirão Preto (FMRP-USP) as Assistant Professor to conduct research and teaching activities on Bioinformatics at the Genetics Department. Now I'm working on the process of recruiting good people and building my lab, both virtually and physically. The virtual lab will be hosted here at OWW soon.
Education | Formação
Publications | PublicaçõesDue to some evil copyright issues, I can't make available here all papers I co-authored. However, how about at this link ? And remember... Google is your friend ;-) Devido a algumas questões malígnas de direitos autorais, eu não posso deixar disponíveis aqui todos os artigos em que fui co-autor. Entretanto, que tal neste link ? E lembre-se, o Google é seu amigo ;-)
Methods | MétodosUsing credibility intervals instead of hypothesis tests in SAGE analysis Bayesian model accounting for within-class biological variability in Serial Analysis of Gene Expression (SAGE) HTself: self-self based statistical test for low-replication microarray studies BayGO: Bayesian analysis of ontology term enrichment in microarray data SpotWhatR: an user-friendly microarray data analysis system BayBoots: a model-free Bayesian tool to identify class markers from gene expression data Simcluster: clustering enumeration gene expression data on the simplex space ProbCD: enrichment analysis accounting for categorization uncertainty
Applied | AplicaçõesDNA microarray-based genome comparison of a pathogenic and a nonpathogenic strain of Xylella fastidiosa delineates genes important for bacterial virulence DNA microarrays for comparative genomics and analysis of gene expression in Trypanosoma cruzi Gene discovery and expression profile analysis through EST sequencing from different developmental stages of the chytridiomycete Blastocladiella emersonii Transcription profiling of signal transduction-related genes in sugarcane tissues Whole-genome expression profiling of Xylella fastidiosa in response to growth on glucose Gene expression profile associated to response to doxorubicin based therapy in breast cancer Evaluation of reference-based two-color methods for measurement of gene expression ratios using spotted cDNA microarrays Global gene expression analysis of the heat shock response in the phytopathogen Xylella fastidiosa Differential transcription profiles in Trypanosoma cruzi associated with clinical forms of Chagas disease: maxicircle NADH dehydrogenase subunit 7 gene truncation in asymptomatic patient isolates Signal transduction-related responses to phytohormones and environmental challenges in sugarcane Common molecular pathways involved in human CD133+ / CD34+ progenitor cell expansion and cancer Multisite fMRI reproducibility of a motor task using identical MR systems Comparative transcriptome analysis of Listeria monocytogenes strains of the two major lineages reveals differences in virulence, cell wall and stress response The SUCEST-FUN project: identifying genes that regulate sucrose content in sugarcane plants The Iron Stimulon of Xylella fastidiosa Includes Genes for Type IV Pilus and Colicin V-Like Bacteriocins
Other | OutrasIntellectual property and public research in biotechnology: the scientists opinion Biology and Physics integration: building genetic regulatory networks using differential equations (in Portuguese) Chapter 11 - Statistical Methods in Serial Analysis of Gene Expression (SAGE) Chapter 2 - Constructing probabilistic genetic networks of Plasmodium falciparum from dynamical expression signals of the intraerythrocytic development cycle. Genes associated to sucrose content
Contributions to Wikipedia | Contribuições a Wikipédia
Contact Information | Informações para ContatoProf. Dr. Ricardo Zorzetto Nicoliello Vêncio |
