User:Richard C. Cronn: Difference between revisions
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'''Note! All articles are available for free download from TreeSearch, the US Forest Service publication server (http://www.treesearch.fs.fed.us/ | '''Note! All articles are available for free download from TreeSearch, the US Forest Service publication server (http://www.treesearch.fs.fed.us/ | ||
)'''<br> | )'''<br> | ||
'''A SNP resource for Douglas-fir: de novo transcriptome assembly and SNP detection and validation'''<br> | '''A SNP resource for Douglas-fir: de novo transcriptome assembly and SNP detection and validation'''<br> | ||
''BMC Genomics 2013, 14:137 doi:10.1186/1471-2164-14-137<br> | ''BMC Genomics 2013, 14:137 doi:10.1186/1471-2164-14-137<br> | ||
Glenn T Howe, Jianbin Yu, [[Brian_J._Knaus| Brian J Knaus]], [[Richard Cronn]], et al.<br> | |||
[http://www.biomedcentral.com/1471-2164/14/137/abstract| URL] [http://www.biomedcentral.com/content/pdf/1471-2164-14-137.pdf| PDF reprint] | [http://www.biomedcentral.com/1471-2164/14/137/abstract| URL] [http://www.biomedcentral.com/content/pdf/1471-2164-14-137.pdf | PDF reprint] | ||
'''Targeted enrichment strategies for next-generation plant biology'''<br> | |||
''American Journal of Botany 2012, 99(2):291-311, doi: 10.3732/ajb.1100356 <br> | |||
[[Richard Cronn]], [[Brian_J._Knaus| Brian J Knaus]], [[Aaron_Liston | Aaron Liston]],Peter J. Maughan, et a. <br> | |||
[http://www.amjbot.org/content/99/2/291.long URL] [http://www.amjbot.org/content/99/2/291.full.pdf+html | PDF reprint] | |||
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''BMC Ecology 2011, 11:10, doi:10.1186/1472-6785-11-10<br> | ''BMC Ecology 2011, 11:10, doi:10.1186/1472-6785-11-10<br> | ||
[[Brian_J._Knaus| Brian J Knaus]], [[Richard Cronn]], [[Aaron_Liston | Aaron Liston]], Kristine Pilgrim, Michael K. Schwartz<br> | [[Brian_J._Knaus| Brian J Knaus]], [[Richard Cronn]], [[Aaron_Liston | Aaron Liston]], Kristine Pilgrim, Michael K. Schwartz<br> | ||
[http://www.biomedcentral.com/1472-6785/11/10 URL] [http://www.biomedcentral.com/content/pdf/1472-6785-11-10.pdf PDF reprint] | [http://www.biomedcentral.com/1472-6785/11/10 URL] [http://www.biomedcentral.com/content/pdf/1472-6785-11-10.pdf | PDF reprint] | ||
'''Finding a (pine) needle in a haystack: chloroplast genome sequence divergence in rare and widespread pines'''<br> | '''Finding a (pine) needle in a haystack: chloroplast genome sequence divergence in rare and widespread pines'''<br> | ||
''Molecular Ecology 2010, Feb, 19(s1): 100-114, doi:10.1111/j.1365-294X.2009.04474.x<br> | ''Molecular Ecology 2010, Feb, 19(s1): 100-114, doi:10.1111/j.1365-294X.2009.04474.x<br> | ||
Justen B. Whittall, John V. Syring, [[Matthew_Parks| Matthew Parks]], Jason Buenrostro, Cindy Dick, [[Aaron_Liston | Aaron Liston]],[[Richard Cronn]]<br> | Justen B. Whittall, John V. Syring, [[Matthew_Parks| Matthew Parks]], Jason Buenrostro, Cindy Dick, [[Aaron_Liston | Aaron Liston]],[[Richard Cronn]]<br> | ||
[http://onlinelibrary.wiley.com/doi/10.1111/j.1365-294X.2009.04474.x/abstract URL][http://www.treesearch.fs.fed.us/pubs/36321 PDF reprint] | [http://onlinelibrary.wiley.com/doi/10.1111/j.1365-294X.2009.04474.x/abstract URL][http://www.treesearch.fs.fed.us/pubs/36321 | PDF reprint] | ||
'''Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes | '''Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes | ||
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''BMC Biology 2009, 7:84, doi:10.1186/1741-7007-7-84 <br> | ''BMC Biology 2009, 7:84, doi:10.1186/1741-7007-7-84 <br> | ||
[[Matthew_Parks| Matthew Parks]], [[Richard Cronn]], [[Aaron_Liston | Aaron Liston]]<br> | [[Matthew_Parks| Matthew Parks]], [[Richard Cronn]], [[Aaron_Liston | Aaron Liston]]<br> | ||
[http://www.biomedcentral.com/1741-7007/7/84 URL] [http://www.biomedcentral.com/content/pdf/1741-7007-7-84.pdf PDF reprint] | [http://www.biomedcentral.com/1741-7007/7/84 URL] [http://www.biomedcentral.com/content/pdf/1741-7007-7-84.pdf | PDF reprint] | ||
===Other Articles, Not Peer Reviewed=== | ===Other Articles, Not Peer Reviewed=== | ||
Revision as of 00:56, 5 March 2013
Contact Info
Richard Cronn
Pacific Northwest Research Station
USDA Forest Service
3200 SW Jefferson Way
Corvallis, OR 97330 USA
I lead research in the Forest Plant Molecular Genetics lab (a.k.a., the Cronn Lab), which is part of the Genetics and Silviculture Team in the Landscape and Watershed Management Program at the PNW Research Station. We're on OpenWetWare to share lab and informatics protocols that are directed primarily at using ultra-high throughput short read sequencers in population genetics and genomics applications.
Education
- 1997, PhD, Iowa State University, Ames, IA, USA
- 1991, MSc, University of Montana, Missoula, MT, USA
- 1986, BS, Drake University, Des Moines, IA, USA
Research Interests
- Molecular basis of climatic sensing and adaptation in plants
- Plant population and landscape genetics
- Chloroplast genome evolution
A Few Articles That Provide Examples Of Our Research
Note! All articles are available for free download from TreeSearch, the US Forest Service publication server (http://www.treesearch.fs.fed.us/
)
A SNP resource for Douglas-fir: de novo transcriptome assembly and SNP detection and validation
BMC Genomics 2013, 14:137 doi:10.1186/1471-2164-14-137
Glenn T Howe, Jianbin Yu, Brian J Knaus, Richard Cronn, et al.
URL | PDF reprint
Targeted enrichment strategies for next-generation plant biology
American Journal of Botany 2012, 99(2):291-311, doi: 10.3732/ajb.1100356
Richard Cronn, Brian J Knaus, Aaron Liston,Peter J. Maughan, et a.
URL | PDF reprint
Multiplexed microsatellite recovery using massively parallel sequencing
Molecular Ecology Resources 2011, 11(6):1060-1067, doi: 10.1111/j.1755-0998.2011.03033.x
Tara N. Jennings, Brian J Knaus, Thomas D. Mullens, Susan M. Haig, Richard Cronn
URL | PDF reprint
Mitochondrial genome sequences illuminate maternal lineages of conservation concern in a rare carnivore
BMC Ecology 2011, 11:10, doi:10.1186/1472-6785-11-10
Brian J Knaus, Richard Cronn, Aaron Liston, Kristine Pilgrim, Michael K. Schwartz
URL | PDF reprint
Finding a (pine) needle in a haystack: chloroplast genome sequence divergence in rare and widespread pines
Molecular Ecology 2010, Feb, 19(s1): 100-114, doi:10.1111/j.1365-294X.2009.04474.x
Justen B. Whittall, John V. Syring, Matthew Parks, Jason Buenrostro, Cindy Dick, Aaron Liston,Richard Cronn
URL| PDF reprint
Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes
BMC Biology 2009, 7:84, doi:10.1186/1741-7007-7-84
Matthew Parks, Richard Cronn, Aaron Liston
URL | PDF reprint
Other Articles, Not Peer Reviewed
Scientists probe genetic component of climate-hardy species
Land Letter April 28, 2011
URL
