User:Richard C. Cronn

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(A Few Articles That Provide Examples Of Our Research)
Current revision (03:09, 5 March 2013) (view source)
(A Few Articles That Provide Examples Of Our Research)
 
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'''A SNP resource for Douglas-fir: de novo transcriptome assembly and SNP detection and validation'''<br>
'''A SNP resource for Douglas-fir: de novo transcriptome assembly and SNP detection and validation'''<br>
''BMC Genomics 2013, 14:137 doi:10.1186/1471-2164-14-137<br>
''BMC Genomics 2013, 14:137 doi:10.1186/1471-2164-14-137<br>
-
Glenn T Howe, Jianbin Yu, [[Brian_J._Knaus| Brian J Knaus]], [[Richard Cronn]], et al.<br>
+
Glenn T Howe, Jianbin Yu, [[user: Brian J. Knaus| Brian J. Knaus]], [[user: Richard C. Cronn | Rich Cronn]], et al.<br>
[http://www.biomedcentral.com/1471-2164/14/137/abstract| URL] [http://www.biomedcentral.com/content/pdf/1471-2164-14-137.pdf | PDF reprint]
[http://www.biomedcentral.com/1471-2164/14/137/abstract| URL] [http://www.biomedcentral.com/content/pdf/1471-2164-14-137.pdf | PDF reprint]
'''Targeted enrichment strategies for next-generation plant biology'''<br>
'''Targeted enrichment strategies for next-generation plant biology'''<br>
''American Journal of Botany 2012, 99(2):291-311, doi: 10.3732/ajb.1100356 <br>
''American Journal of Botany 2012, 99(2):291-311, doi: 10.3732/ajb.1100356 <br>
-
[[Richard Cronn]], [[Brian_J._Knaus| Brian J Knaus]], [[Aaron_Liston | Aaron Liston]], Peter J. Maughan, et a.. <br>
+
[[user: Richard C. Cronn | Rich Cronn]], [[user: Brian J. Knaus| Brian J. Knaus]], [[User:Aaron_Liston| Aaron Liston]], Peter J. Maughan, et al. <br>
[http://www.amjbot.org/content/99/2/291.long URL] [http://www.amjbot.org/content/99/2/291.full.pdf+html | PDF reprint]
[http://www.amjbot.org/content/99/2/291.long URL] [http://www.amjbot.org/content/99/2/291.full.pdf+html | PDF reprint]
'''Separating the wheat from the chaff: mitigating the effects of noise in a plastome phylogenomic data set from ''Pinus'''''<br>
'''Separating the wheat from the chaff: mitigating the effects of noise in a plastome phylogenomic data set from ''Pinus'''''<br>
''BMC Evolutionary Biology 2012, 12:100, doi:10.1186/1471-2148-12-100<br>
''BMC Evolutionary Biology 2012, 12:100, doi:10.1186/1471-2148-12-100<br>
-
[[Matthew_Parks| Matthew Parks]], [[Richard Cronn]], [[Aaron_Liston | Aaron Liston]]  
+
[[user: Matthew Parks| Matt Parks]], [[user: Richard C. Cronn | Rich Cronn]], [[User:Aaron_Liston| Aaron Liston]]
[http://www.biomedcentral.com/1471-2148/12/100 URL] [http://www.biomedcentral.com/content/pdf/1471-2148-12-100.pdf | PDF reprint]
[http://www.biomedcentral.com/1471-2148/12/100 URL] [http://www.biomedcentral.com/content/pdf/1471-2148-12-100.pdf | PDF reprint]
'''Multiplexed microsatellite recovery using massively parallel sequencing'''<br>
'''Multiplexed microsatellite recovery using massively parallel sequencing'''<br>
''Molecular Ecology Resources 2011, 11(6):1060-1067, doi: 10.1111/j.1755-0998.2011.03033.x<br>
''Molecular Ecology Resources 2011, 11(6):1060-1067, doi: 10.1111/j.1755-0998.2011.03033.x<br>
-
[[Tara_N._Jennings|Tara N. Jennings]], [[Brian_J._Knaus| Brian J Knaus]], Thomas D. Mullens, Susan M. Haig, [[Richard Cronn]]<br>
+
[[user: Tara N. Jennings | Tara Jennings]], [[user: Brian J. Knaus| Brian J. Knaus]], Thomas D. Mullens, Susan M. Haig, [[user: Richard C. Cronn | Rich Cronn]]<br>
[http://www.treesearch.fs.fed.us/pubs/39939 URL] [http://www.fs.fed.us/pnw/pubs/journals/pnw_2011_jennings001.pdf | PDF reprint]
[http://www.treesearch.fs.fed.us/pubs/39939 URL] [http://www.fs.fed.us/pnw/pubs/journals/pnw_2011_jennings001.pdf | PDF reprint]
'''Mitochondrial genome sequences illuminate maternal lineages of conservation concern in a rare carnivore'''<br>
'''Mitochondrial genome sequences illuminate maternal lineages of conservation concern in a rare carnivore'''<br>
''BMC Ecology 2011, 11:10, doi:10.1186/1472-6785-11-10<br>
''BMC Ecology 2011, 11:10, doi:10.1186/1472-6785-11-10<br>
-
[[Brian_J._Knaus| Brian J Knaus]], [[Richard Cronn]], [[Aaron_Liston | Aaron Liston]], Kristine Pilgrim, Michael K. Schwartz<br>
+
[[user: Brian J. Knaus| Brian J. Knaus]], [[user: Richard C. Cronn | Rich Cronn]], [[User:Aaron_Liston| Aaron Liston]], Kristine Pilgrim, Michael K. Schwartz<br>
[http://www.biomedcentral.com/1472-6785/11/10 URL] [http://www.biomedcentral.com/content/pdf/1472-6785-11-10.pdf | PDF reprint]
[http://www.biomedcentral.com/1472-6785/11/10 URL] [http://www.biomedcentral.com/content/pdf/1472-6785-11-10.pdf | PDF reprint]
'''Finding a (pine) needle in a haystack: chloroplast genome sequence divergence in rare and widespread pines'''<br>
'''Finding a (pine) needle in a haystack: chloroplast genome sequence divergence in rare and widespread pines'''<br>
''Molecular Ecology 2010, Feb, 19(s1): 100-114, doi:10.1111/j.1365-294X.2009.04474.x<br>
''Molecular Ecology 2010, Feb, 19(s1): 100-114, doi:10.1111/j.1365-294X.2009.04474.x<br>
-
Justen B. Whittall, John V. Syring, [[Matthew_Parks| Matthew Parks]], Jason Buenrostro, Cindy Dick, [[Aaron_Liston | Aaron Liston]],[[Richard Cronn]]<br>
+
Justen B. Whittall, John V. Syring, [[user: Matthew Parks| Matt Parks]], Jason Buenrostro, Cindy Dick, [[User:Aaron_Liston| Aaron Liston]],[[user: Richard C. Cronn | Rich Cronn]]<br>
[http://onlinelibrary.wiley.com/doi/10.1111/j.1365-294X.2009.04474.x/abstract URL][http://www.treesearch.fs.fed.us/pubs/36321 | PDF reprint]
[http://onlinelibrary.wiley.com/doi/10.1111/j.1365-294X.2009.04474.x/abstract URL][http://www.treesearch.fs.fed.us/pubs/36321 | PDF reprint]
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'''<br>
'''<br>
''BMC Biology 2009, 7:84, doi:10.1186/1741-7007-7-84 <br>
''BMC Biology 2009, 7:84, doi:10.1186/1741-7007-7-84 <br>
-
[[Matthew_Parks| Matthew Parks]], [[Richard Cronn]], [[Aaron_Liston | Aaron Liston]]<br>
+
[[user: Matthew Parks| Matt Parks]], [[user: Richard C. Cronn | Rich Cronn]], [[User:Aaron_Liston| Aaron Liston]]<br>
[http://www.biomedcentral.com/1741-7007/7/84 URL] [http://www.biomedcentral.com/content/pdf/1741-7007-7-84.pdf | PDF reprint]
[http://www.biomedcentral.com/1741-7007/7/84 URL] [http://www.biomedcentral.com/content/pdf/1741-7007-7-84.pdf | PDF reprint]

Current revision

Contents

Contact Info

Cronn in the field (artistic impression)
Cronn in the field (artistic impression)

Richard Cronn
Pacific Northwest Research Station
USDA Forest Service
3200 SW Jefferson Way
Corvallis, OR 97330 USA

I lead research in the Forest Plant Molecular Genetics lab (a.k.a., the Cronn Lab), which is part of the Genetics and Silviculture Team in the Landscape and Watershed Management Program at the PNW Research Station. We're on OpenWetWare to share lab and informatics protocols that are directed primarily at using ultra-high throughput short read sequencers in population genetics and genomics applications.


Education

  • 1997, PhD, Iowa State University, Ames, IA, USA
  • 1991, MSc, University of Montana, Missoula, MT, USA
  • 1986, BS, Drake University, Des Moines, IA, USA

Research Interests

  • Molecular basis of climatic sensing and adaptation in plants
  • Plant population and landscape genetics
  • Chloroplast genome evolution

A Few Articles That Provide Examples Of Our Research

Note! All articles are available for free download from TreeSearch, the US Forest Service publication server (http://www.treesearch.fs.fed.us/ )


A SNP resource for Douglas-fir: de novo transcriptome assembly and SNP detection and validation
BMC Genomics 2013, 14:137 doi:10.1186/1471-2164-14-137
Glenn T Howe, Jianbin Yu, Brian J. Knaus, Rich Cronn, et al.
URL | PDF reprint

Targeted enrichment strategies for next-generation plant biology
American Journal of Botany 2012, 99(2):291-311, doi: 10.3732/ajb.1100356
Rich Cronn, Brian J. Knaus, Aaron Liston, Peter J. Maughan, et al.
URL | PDF reprint

Separating the wheat from the chaff: mitigating the effects of noise in a plastome phylogenomic data set from Pinus
BMC Evolutionary Biology 2012, 12:100, doi:10.1186/1471-2148-12-100
Matt Parks, Rich Cronn, Aaron Liston URL | PDF reprint

Multiplexed microsatellite recovery using massively parallel sequencing
Molecular Ecology Resources 2011, 11(6):1060-1067, doi: 10.1111/j.1755-0998.2011.03033.x
Tara Jennings, Brian J. Knaus, Thomas D. Mullens, Susan M. Haig, Rich Cronn
URL | PDF reprint

Mitochondrial genome sequences illuminate maternal lineages of conservation concern in a rare carnivore
BMC Ecology 2011, 11:10, doi:10.1186/1472-6785-11-10
Brian J. Knaus, Rich Cronn, Aaron Liston, Kristine Pilgrim, Michael K. Schwartz
URL | PDF reprint

Finding a (pine) needle in a haystack: chloroplast genome sequence divergence in rare and widespread pines
Molecular Ecology 2010, Feb, 19(s1): 100-114, doi:10.1111/j.1365-294X.2009.04474.x
Justen B. Whittall, John V. Syring, Matt Parks, Jason Buenrostro, Cindy Dick, Aaron Liston, Rich Cronn
URL| PDF reprint

Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes
BMC Biology 2009, 7:84, doi:10.1186/1741-7007-7-84
Matt Parks, Rich Cronn, Aaron Liston
URL | PDF reprint

Other Articles, Not Peer Reviewed

Scientists probe genetic component of climate-hardy species
Land Letter April 28, 2011
URL


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