User:Rob Smith: Difference between revisions

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[[Image:rob_smith.png|thumb|right|Rob Smith]]
[[Image:rob_smith.png|thumb|right|Rob Smith]]


*Rob Smith
*Rob Smith, Brigham Young University, Department of Computer Science, Provo, UT 84602
*Brigham Young University
*Department of Computer Science
*Provo, UT 84602
*[[Special:Emailuser/Rob Smith|Email me through OpenWetWare]]
*[[Special:Emailuser/Rob Smith|Email me through OpenWetWare]]


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==Research interests==
==Research interests==
<!-- Feel free to add brief descriptions to your research interests as well -->
<!-- Feel free to add brief descriptions to your research interests as well -->
# Lipidomics (emphasis on algorithmic approaches to quantitation)
My research focuses on computational mass spectrometry, a term I coined to refer to the algorithmic aspects of interpreting mass spectrometry data. Currently my focus is on algorithms for high throughput:
# Proteomics (emphasis on algorithmic approaches to quantitation)
# Direct infusion (shotgun) lipidomics quantitation
# LC/MS lipidomics quantitation
# Proteomics quantitation
# Lipidomics / proteomics registration
# Lipidomics / proteomics case/control differentiation
# Lipid labelling


==Publications==
==Publications==
<!-- Replace the PubMed ID's ("pmid=#######") below with the PubMed ID's for your publications. You can add or remove lines as needed
#Smith, R., Ventura, D., and Prince, J.T.: Label-Free, ID-Free, Parameter-Free Peak Picking and Feature Selection for LC-MS Data, 61st Annual Conference of the American Society for Mass Spectrometry, Minneapolis, MN, June 2013
<biblio>
#Coutu, B.G., Alexander, K.L., Anthonymuthu, T.S., Smith, R., Hansen, M. and Prince, J.T.: Robust Lipid Fragmentation Modelling to Identify Global Lipid Changes During Epithelial-Mesenchymal Transition (EMT), 61st Annual Conference of the American Society for Mass Spectrometry, Minneapolis, MN, June 2013
#Paper1 pmid=6947258
#Smith, R., Ventura, D., and Prince, J.T.: Novel Algorithms and the Benefits of Comparative Validation, Bioinformatics, 2013
#Paper2 pmid=13718526
#Smith, R., and Ventura, D.: A General Model for Continuous Noninvasive Pulmonary Artery Pressure Estimation, Computers in Biology and Medicine, 2013
// leave a comment about a paper here
#Smith, R., Williamson, R., Ventura, D., and Prince, J.T.: Rubabel: Wrapping OpenBabel with Ruby, Journal of Cheminformatics, 2013
#Book1 isbn=0879697164
#Smith, R., Dennis, A., and Ventura, D.: Automatic Composition from Non-musical Inspiration Sources, Proceedings of the Third International Conference on Computational Creativity, 160–164, 2012.
</biblio>
#Smith, R.: A General Model for Continuous Noninvasive Pulmonary Artery Pressure Estimation, MS Thesis, Brigham Young University, 2011
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Latest revision as of 08:41, 17 June 2013

Contact Info

Rob Smith

I work in the Machine Learning Lab in the Computer Science Department at Brigham Young University. I am also an honorary member of the Prince lab at BYU, giving algorithmic insight on quantitation problems.

Education

  • 2015 (expected), PhD, BYU, CS with emphasis in Bioinformatics and Computational Biology
  • 2012, MS, BYU, CS
  • 2007, BS, University of MD, Baltimore County, CS

Research interests

My research focuses on computational mass spectrometry, a term I coined to refer to the algorithmic aspects of interpreting mass spectrometry data. Currently my focus is on algorithms for high throughput:

  1. Direct infusion (shotgun) lipidomics quantitation
  2. LC/MS lipidomics quantitation
  3. Proteomics quantitation
  4. Lipidomics / proteomics registration
  5. Lipidomics / proteomics case/control differentiation
  6. Lipid labelling

Publications

  1. Smith, R., Ventura, D., and Prince, J.T.: Label-Free, ID-Free, Parameter-Free Peak Picking and Feature Selection for LC-MS Data, 61st Annual Conference of the American Society for Mass Spectrometry, Minneapolis, MN, June 2013
  2. Coutu, B.G., Alexander, K.L., Anthonymuthu, T.S., Smith, R., Hansen, M. and Prince, J.T.: Robust Lipid Fragmentation Modelling to Identify Global Lipid Changes During Epithelial-Mesenchymal Transition (EMT), 61st Annual Conference of the American Society for Mass Spectrometry, Minneapolis, MN, June 2013
  3. Smith, R., Ventura, D., and Prince, J.T.: Novel Algorithms and the Benefits of Comparative Validation, Bioinformatics, 2013
  4. Smith, R., and Ventura, D.: A General Model for Continuous Noninvasive Pulmonary Artery Pressure Estimation, Computers in Biology and Medicine, 2013
  5. Smith, R., Williamson, R., Ventura, D., and Prince, J.T.: Rubabel: Wrapping OpenBabel with Ruby, Journal of Cheminformatics, 2013
  6. Smith, R., Dennis, A., and Ventura, D.: Automatic Composition from Non-musical Inspiration Sources, Proceedings of the Third International Conference on Computational Creativity, 160–164, 2012.
  7. Smith, R.: A General Model for Continuous Noninvasive Pulmonary Artery Pressure Estimation, MS Thesis, Brigham Young University, 2011
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