User:Saroj Pandey/Notebook/SNP PCR optimization/2014/09/18

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SNP PCR

Primers ending in G

  • fixed forward 161bp L: high 3' stability

TAS2R38_1f: GGGATGTAGTGAAGAGGCAGG

Length: 21 bp Tm: 61.0 °C GC: 57.1 % ANY: 2.0 SELF: 0.0

TAS2R38_1r: GATGGCTTGGTAGCTGTGGT

Length: 20 bp Tm: 60.1 °C GC: 55.0 % ANY: 4.0 SELF: 0.0

Product Size: 161 bp Pair Any: 3.0 Pair End: 0.0


  • fixed backward 235bp R: high end self complementarity

TAS2R38_2f: GGTGGCAACCAGGTCTTTAG

Length: 20 bp Tm: 59.6 °C GC: 55.0 % ANY: 6.0 SELF: 2.0

TAS2R38_2r: CAATCACTGTTGCTCAGTGC

Length: 20 bp Tm: 58.0 °C GC: 50.0 % ANY: 6.0 SELF: 4.0

Product Size: 235 bp Pair Any: 5.0 Pair End: 1.0


Primers ending in C

  • fixed forward 161bp

TAS2R38_C1f: GGGATGTAGTGAAGAGGCAGC

Length:21 bp Tm: 61.2 °C GC:57.1 % ANY:3.0 SELF:3.0

TAS2R38_C1r: GATGGCTTGGTAGCTGTGGT

Length:20 bp Tm: 60.1 °C GC:55.0 % ANY:4.0 SELF:0.0


  • fixed backward 235bp

TAS2R38_C2f: GGTGGCAACCAGGTCTTTAG

Length:20 bp Tm: 59.6 °C GC:55.0 % ANY:6.0 SELF:2.0

TAS2R38_C2f: CAATCACTGTTGCTCAGTGG

Length:20 bp Tm: 57.8 °C GC:50.0 % ANY:6.0 SELF:4.0


PCR 1

Electrophoresis
Electrophoresis

PCR 2

Electrophoresis