User:Sean E. Lauber: Difference between revisions
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*[[Sean_Lauber:AMIRA - Creating Label Fields by Lung Segmentation| AMIRA - Creating Label Fields by Lung Segmentation]] | *[[Sean_Lauber:AMIRA - Creating Label Fields by Lung Segmentation| AMIRA - Creating Label Fields by Lung Segmentation]] | ||
*[[Sean_Lauber:AMIRA - Generating Histograms| AMIRA - Generating Histograms]] | *[[Sean_Lauber:AMIRA - Generating Histograms| AMIRA - Generating Histograms]] | ||
Revision as of 22:02, 10 July 2013
Contact Info
- sean.laub@gmail.com
Education
- M.Sc, Medical Sciences (Immunology), McMaster University, Hamilton, ON 2010-2012
- B.Sc, Honors Cell & Molecular Biology, Concordia University, Montreal, QC 2005-2010
- DEC, Natural Sciences, John Abbott College, Montreal, QC 2002-2004
Protocols
Richards Lab Protocols
Molecular Techniques
- Cytokeratin IHC staining
- Fibronectin IHC staining
- IHC development
- ELISA Development
- Isotype ELISA against Adenovirus
- Generating Tissue Lysates
- Bradford Assay
- SDS PAGE Protein Electrophoresis
- Western Blotting
- Flow Cytometry
- PCR
- RNA Extraction Using Trizol
- DNA Extraction Using Trizol
- DNase Treatment Using DNA-Free (for Taqman)
- Reverse Transcription using Superscript II (for Taqman)
- qRT-PCR (TaqMan)
Mammalian Cell Culture
- Freezing Mammalian Cells
- Thawing Mammalian Cells
- Culturing Lewis Lung Carcinoma Cells
- MTT Cell Proliferation Assay
- Cytokine Stimulation of Cells
- Culturing of Primary Macrophages
- Adenovirus infection (in vitro)
Technical
- AMIRA - Creating Label Fields by Lung Segmentation
- AMIRA - Generating Histograms
- AMIRA - Density Overlays
- ImageJ - Threshold Analysis
- Using the 7900 HT qPCR Machine
- Using the BDCanto Flow Cytometer
- Heat maps in Excel
Animal Work
- Broncho-alveolar Lavage
- Peritoneal Lavage
- Formalin Fixation & Preparation for Histology
- Mouse Endotracheal Intubation
- Using the Kras G12D Mouse Model for Lung Cancer
- Using the Lewis Lung Carcinoma cell Mouse Model for Lung Cancer
- Kras G12D Genotyping
- Differential cell staining
Joyce Lab Protocols
- DNA Electrophoresis
- Bacterial Transformation
- T-tailing pBSKS
- Ethanol precipitation of DNA
- DNA Phenol extraction
- Preparing RNA from yeast
- Extraction of DNA from an agarose gel
- DNA Ligation
- PCR Mutagenesis
Template excel files (always download the current file)
ELISA template and quadratic formula (for use when equation is not linear)
Cell differential counting template
BAL and Differential Template (Prism)
CT scanning template with example
Stimulating cells in vitro template
Links
Protocols and general information
- Recipes and protocols for stock solutions, competent cells, mini/midi/maxi prep and more
- Protocol-online Protocols
- Biowww.net Protocols
- Restriction digests
- Restriction digest troubleshooting
- More troubleshooting
- Journal of Visualized Experiments
- PSORT
Useful links
- Bitesize Bio
- BioForum
- Scientist Solutions
- Biochemweb.org
- E. coli Genotypes
- Online Mendelian Inheritance in Man
- NCBI
- Uniprot (as good as NCBI)
- Nebcutter 2.0
- Translate DNA
- Promoter Predictor
- Download the Molecular Biology Toolbar
- Useful IHC optimization tips for paraffin embedded tissue (Abcam)
