User:ShawnDouglas/scripts

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'''Misc'''
'''Misc'''
*replace mac return character ('\r') with unix return ('\n')
*replace mac return character ('\r') with unix return ('\n')
-
<pre>cat foo | tr '\r' '\n' > bar</pre>
+
<pre>
 +
cat foo | tr '\r' '\n' > bar
 +
mv bar foo
 +
</pre>

Revision as of 10:49, 27 June 2006

PCR

  • /make-pcr-oligos.py - given target sequence, generate oligos that can be used for PCR assembly of that sequence
  • /random-sequence.py - generate random DNA sequence of specified length
  • /primer.py - given upstream and downstream sense sequence of region to amplify, print out correct primers

Nanostructures

  • /toehold.py - given input sequence generate N-mers orthogonal (to seq and its complement) to be used as toeholds
  • /hexgui.py - Tk GUI for honeycomb lattice program

Misc

  • replace mac return character ('\r') with unix return ('\n')
cat foo | tr '\r' '\n' > bar
mv bar foo
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