User:ShawnDouglas/scripts: Difference between revisions
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'''Misc''' | '''Misc''' | ||
*replace mac return character ('\r') with unix return ('\n') | *replace mac return character ('\r') with unix return ('\n') | ||
<pre>cat foo | tr '\r' '\n' > bar</pre> | <pre> | ||
cat foo | tr '\r' '\n' > bar | |||
mv bar foo | |||
</pre> | |||
Revision as of 07:49, 27 June 2006
PCR
- /make-pcr-oligos.py - given target sequence, generate oligos that can be used for PCR assembly of that sequence
- /random-sequence.py - generate random DNA sequence of specified length
- /primer.py - given upstream and downstream sense sequence of region to amplify, print out correct primers
Nanostructures
- /toehold.py - given input sequence generate N-mers orthogonal (to seq and its complement) to be used as toeholds
- /hexgui.py - Tk GUI for honeycomb lattice program
Misc
- replace mac return character ('\r') with unix return ('\n')
cat foo | tr '\r' '\n' > bar mv bar foo
