User:ShawnDouglas/scripts

PCR

• /make-pcr-oligos.py - given target sequence, generate oligos that can be used for PCR assembly of that sequence
• /random-sequence.py - generate random DNA sequence of specified length
• /primer.py - given upstream and downstream sense sequence of region to amplify, print out correct primers

Nanostructures

• /toehold.py - given input sequence generate N-mers orthogonal (to seq and its complement) to be used as toeholds
• /hexgui.py - Tk GUI for honeycomb lattice program

Misc

• replace mac return character (\015) with unix return (\015\012)

cat file | tr '\r' '\n'