User:Slokwong: Difference between revisions

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[[User:Slokwong/MODULE 1 : Genome Engineering]]
[[User:Slokwong/MODULE 1 : Genome Engineering]]


 
[[User:Slokwong/Module 4: Biomaterial Engineering]]
{| border="1" 
! Ada subunits 
! size,chromosome,null p-type
! notes
|-   
| [http://db.yeastgenome.org/cgi-bin/locus.pl?locus=ADA1 Ada1] (aka HFI1, SUP110, SRM12, GAN1)
| 1.467 kb/489 aa, Chr. XVI, <br>viable
|-   
| [http://db.yeastgenome.org/cgi-bin/locus.pl?locus=ADA2 Ada2] (aka SWI8) 
| 1.305 kb/434aa, Chr. IV, <br>viable
| ==gene product==: Ada histone acetyltransferase complex component,
transcriptional coactivator <br>
==molecular function==: transcription coactivator activity (TAS)<br>
==systematic deletion==:
* viable
* decreased drug resistance (rapamycin)
* decreased drug resistance (wortmannin)
|-   
| [http://db.yeastgenome.org/cgi-bin/locus.pl?locus=ADA3 Ada3](aka NGG1, SWI7) 
| 2.109 kb/702aa, Chr. IV, <br>viable 
|
|- 
| [http://db.yeastgenome.org/cgi-bin/locus.pl?locus=GCN5 Gcn5] (aka ADA4, SWI9) 
| 1.32 kb/439aa, Chr. VII, <br>viable
|
|- 
| [http://db.yeastgenome.org/cgi-bin/locus.pl?locus=Ada5 Ada5] (aka SPT20)
| 1.815 kb/604aa, Chr. XV, <br>viable
| same as SPT20
|}
{| border="1" 
! Spt subunits
! size, chromosome, null p-type
! notes 
|-
| [http://db.yeastgenome.org/cgi-bin/locus.pl?locus=spt3 Spt3] 
| 1.014 kb/337aa, Chr. IV, <br> viable
|
|-   
| [http://db.yeastgenome.org/cgi-bin/locus.pl?locus=Spt7 Spt7](aka GIT2) 
| 3.999 kb/1332aa, Chr. II, <br> viable
|
|-
| [http://db.yeastgenome.org/cgi-bin/locus.pl?locus=Spt8 Spt8] 
| 1.809 kb/602aa, Chr. XII, <br> viable
| ==gene product== transcription factor <br>
==molecular function== 
*  TATA-binding protein binding (IDA, IMP)
*  transcription cofactor activity (IMP, IPI) <br>
==Systematic deletion==
* viable
* Exhibits sensitivity at 5 generations when grown in synthetic complete - trp medium.
* normal chitin levels
* increased drug resistance (rapamycin)
* decreased drug resistance (wortmannin)
|- 
| [http://db.yeastgenome.org/cgi-bin/locus.pl?locus=SPT20 Spt20] (aka Ada5) 
| 1.815 kb/604aa, Chr. XV, <br> viable
| ==gene product== histone acetyltransferase SAGA complex member
transcription factor <br>
==molecular function== transcription cofactor activity (IGI, IMP, IPI)<br>
==systematic deletions==
* decreased drug resistance (rapamycin)
* decreased drug resistance (wortmannin)
|}
{| border="1"
! TAF subunits
! size, chromosome, null p-type
! notes
|- 
| [http://db.yeastgenome.org/cgi-bin/locus.pl?locus=TAF5 TAF5] (aka TAF90) 
| 2.397 kb/798aa, Chr. II, <font color = red>inviable</font color>
|
|-
| [http://db.yeastgenome.org/cgi-bin/locus.pl?locus=TAF6 TAF6] (aka TAF60) 
| 1.551 kb/516aa, Chr. VII, <font color = red>inviable</font color>
|
|- 
| [http://db.yeastgenome.org/cgi-bin/locus.pl?locus=TAF9 TAF9] (aka TAF17) 
| 0.474 kb/157aa, Chr. XIII, <font color = red>inviable</font color>
|
|-
| [http://db.yeastgenome.org/cgi-bin/locus.pl?locus=TAF10 TAF10] (aka TAF23, TAF25)
| 0.621 kb/206aa, Chr. IV, <font color = red>inviable</font color>
|
|-
| [http://db.yeastgenome.org/cgi-bin/locus.pl?locus=TAF12 TAF12](aka TAF61, TAF68)
| 1.620 kb/539aa, Chr. IV, <font color = red>inviable</font color>
|
|}
{| border="1"
! Tra1 subunit 
! size, chromosome, null p-type
! notes
|- 
| [http://db.yeastgenome.org/cgi-bin/locus.pl?locus=TRA1 Tra1] 
| 11.235 kb/3744aa, Chr. VIII, <font color = red>inviable</font color>
|
|}
{| border="1"
! other subunits 
! size, chromosome, null p-type
! notes
|- 
| [http://db.yeastgenome.org/cgi-bin/locus.pl?locus=sgf73 Sgf73] 
| 1.974 kb/657aa, Chr. VII , <br> viable
|
|-
| [http://db.yeastgenome.org/cgi-bin/locus.pl?locus=sgf29 Sgf29] 
| 0.779 kb/259aa, Chr. III, <br> viable
|
|-
| [http://db.yeastgenome.org/cgi-bin/locus.pl?locus=sgf11 Sgf11] 
| 0.3 kb/99aa, Chr.XVI, <br> viable
|
|-
| [http://db.yeastgenome.org/cgi-bin/locus.pl?locus=ubp8 Ubp8] 
| 1.416 kb/471aa, Chr. XIII, <br> viable
|
|- 
| [http://db.yeastgenome.org/cgi-bin/locus.pl?locus=Sus1 Sus1]
| gene with intron, Chr. II, <br> viable 
|
|}

Latest revision as of 13:41, 1 May 2007

Name: Sophie Wong
Major: Course 20
Email: slokwong AT mit DOT edu



User:Slokwong/MODULE 1 : Genome Engineering

User:Slokwong/Module 4: Biomaterial Engineering