User:Vincent Rouilly

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Current revision (12:36, 18 November 2012) (view source)
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email: vincent.rouilly [-at-] gmail [-dot-] com
email: vincent.rouilly [-at-] gmail [-dot-] com
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Basel, Switzerland
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Paris, France.
[http://www.linkedin.com/in/vincentrouilly join my LinkedIn Network]
[http://www.linkedin.com/in/vincentrouilly join my LinkedIn Network]
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* '''Research interests''':
 
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** Synthetic Biology: Part Characterisation and Standardisation
 
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** Computational Biology: Stochastic Gene Expression, Rational Nucleic Acid Probe design.
 
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** Laboratory Automation and High Content Screening Analysis
 
== Work Experiences ==
== Work Experiences ==
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* Bioinformatician, LabEx Milieu Interieur, Institut Pasteur, Paris France.
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* Bioinformatician, LabEx Milieu Interieur, Institut Pasteur, Paris France (Current).
* Data Analyst & Scientific Software Programmer, ResearchIT, University of Basel, Switzerland.
* Data Analyst & Scientific Software Programmer, ResearchIT, University of Basel, Switzerland.
* Research Associate, Institute of Systems and Synthetic Biology, Imperial College London
* Research Associate, Institute of Systems and Synthetic Biology, Imperial College London
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* GE Medical Systems, Paris, Software R&D Engineer.
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* GE Medical Systems, Paris, Software R&D Engineer, Image Processing on digital mammography systems.
* Visiospace, Paris, Software R&D Engineer.
* Visiospace, Paris, Software R&D Engineer.
== Education ==  
== Education ==  
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* PhD,Department of Bioengineering, Imperial College London.
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* PhD, Computational Biology, Department of Bioengineering, Imperial College London.
* M.Sc, ENST Paris and ERASMUS exchange at ETSIT Madrid (Signal and Image Processing Major).
* M.Sc, ENST Paris and ERASMUS exchange at ETSIT Madrid (Signal and Image Processing Major).
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(or how to keep track of what is happening in the Synthetic Biology community)
(or how to keep track of what is happening in the Synthetic Biology community)
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* '''TATAvox Blog''': [http://tatavox.wordpress.com link]  
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<!--* '''TATAvox Blog''': [http://tatavox.wordpress.com link] -->
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* '''Personal Tweeter Feed''' : [http://twitter.com/vrouilly link]
* '''Tweeter Feed on SynBioNews''' : [http://twitter.com/SynBioNews link]
* '''Tweeter Feed on SynBioNews''' : [http://twitter.com/SynBioNews link]
* '''Facebook group on synthetic biology''': [http://www.facebook.com/#!/group.php?gid=2204701004&ref=mf link]
* '''Facebook group on synthetic biology''': [http://www.facebook.com/#!/group.php?gid=2204701004&ref=mf link]
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* [[User:Vincent Rouilly/Distributed Annotation System (DAS) for DNA Part Registries | DAS server on Google App Engine for DNA parts]]
* [[User:Vincent Rouilly/Distributed Annotation System (DAS) for DNA Part Registries | DAS server on Google App Engine for DNA parts]]
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==Current Projects==
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==Past Projects==
* '''Recombineering for Synthetic Biology'''
* '''Recombineering for Synthetic Biology'''
** Homology recombination-based promoter screening construct.
** Homology recombination-based promoter screening construct.
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* [http://www.connotea.org/wiki/User:vincentrouilly my Connotea bookmark]
* [http://www.connotea.org/wiki/User:vincentrouilly my Connotea bookmark]
* [http://delicious.com/Manosquin my delicious bookmark]
* [http://delicious.com/Manosquin my delicious bookmark]
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* [http://tataaavox.wordpress.com/ blog]
==Teaching Experience ==
==Teaching Experience ==
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* [http://www.tincantools.com TinCanTools: embedded ARM boards for engineers, programmers, and enthusiasts]
* [http://www.tincantools.com TinCanTools: embedded ARM boards for engineers, programmers, and enthusiasts]
* [http://www.phidgets.com/ Phidgets: Sensing/Control building blocks from your PC]
* [http://www.phidgets.com/ Phidgets: Sensing/Control building blocks from your PC]
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<!--
== OWW ideas (random) ==
== OWW ideas (random) ==
=== building a stronger community ===
=== building a stronger community ===
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**image annotation (microscope images, gel analysis, colonies plate ..) see iNote, SVG.
**image annotation (microscope images, gel analysis, colonies plate ..) see iNote, SVG.
**graph editor/viewer to build/view/run kinetic models (SBML, CellML ...)
**graph editor/viewer to build/view/run kinetic models (SBML, CellML ...)
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== Project ==
== Project ==
Here is an overview of the modelling framework I am working on:
Here is an overview of the modelling framework I am working on:

Current revision


Vincent Rouilly's Profile


email: vincent.rouilly [-at-] gmail [-dot-] com

Paris, France.

join my LinkedIn Network

Work Experiences

  • Bioinformatician, LabEx Milieu Interieur, Institut Pasteur, Paris France (Current).
  • Data Analyst & Scientific Software Programmer, ResearchIT, University of Basel, Switzerland.
  • Research Associate, Institute of Systems and Synthetic Biology, Imperial College London
  • GE Medical Systems, Paris, Software R&D Engineer, Image Processing on digital mammography systems.
  • Visiospace, Paris, Software R&D Engineer.

Education

  • PhD, Computational Biology, Department of Bioengineering, Imperial College London.
  • M.Sc, ENST Paris and ERASMUS exchange at ETSIT Madrid (Signal and Image Processing Major).

Affiliations

Synthetic Biology in the making

(or how to keep track of what is happening in the Synthetic Biology community)

Research Interests

  • Computational Biology: stochastic processes, Generalized Petri Nets, Agent Based modelling, Design of Experiments.
  • Contributing to build a Synthetic Biology framework (establishing standards, design for modularity and re-usability, parts characterization) + societal impact of Synthetic Biology.
  • Laboratory Information System.
  • Laboratory Automation

My Open Source Hardware/Software Projects to support Synthetic Biology

Past Projects

  • Recombineering for Synthetic Biology
    • Homology recombination-based promoter screening construct.
    • Homology recombination-based rolling device integration.
  • Droplet-based Microfluidics for Synthetic Biology
  • Open Source Hardware for Synthetic Biology
    • Arduino-based Peltier controller
    • Colony counting / picking system

Online shared resources

Teaching Experience

OWW Contributions

Other:

Interesting links found on OWW

Useful Open Source Softwares

Cool Open Source Hardware Projects

Recommended Books

Do-It-Yourself / Developing World Technologies for Biological Engineering

General

DNA manipulation

Measuremements and Characterization

Data Acquisition, Control and Lab Automation

Project

Here is an overview of the modelling framework I am working on: Image:MSMrouilly2.png

Delicio.us Tags

Who is visiting my page?

Locations of visitors to this page

Sandbox

Personal tools